RNA id: XM_026929692.2


Basic Information

Item Value
RNA id XM_026929692.2
length 1226
RNA type mRNA
GC content 0.51
exon number 5
gene id znrf2a
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 6621216 ~ 6634193 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACCATAATAACCTTCGGCTCGTACCCGTACTCGTCTCCGCGCGCACCGGTCGCGTCGCCTTGTTTTTATCGGCGCTGTTATTATGTAGCGTTTGGACGTTTCATTTCTGAGCAGTTCACACGCgcgtatttattttttagtgtgAATGCATAAGTTTGTCCAAATATAACGGAGGTTGTTGACAATCAGGAGGCCTGTGGACAGTTTTGACACCGTCGCAAAACTTCGGTTACGGAAGAGCAACTAGTGTGCAGCCATGACCTTTTATTCTGCGCCATGTAGCGACTTGTTGTAGGATTATTTTCACATCTGGAGTTTAACCCCATCCACAGCCGAGCTCAGACATCGTTTGACTGATCCCAGCtcgctgttttgttttgttttgttttgttttaaagggACGTTGTTTGTTTTTAGGGCCCGAGCAGCGCGTCCTGAACAAAAACGCACTGAGATAAACACATGGGGCCCAAACAGAGCAGTCCGGCGGCTAGTGCTCGCCTCAGGGCTTACTCAGGCTCGGATGTGCCCGCTTCCACCACCACAGCCGCCGGTTCCGGGAGCGCGAGCGCAGCGGCGATTCGGTACTACAACGGAAACCAGCAGCAGGTCGGAGCGCGCGGACGGTACGCGGCGGACGGCGCGAGACCCAACTCGCTTTTTCAGCCCACCATCATAGCGCAAGGCAGCGGGACTCAAAGCGATGAAGACGCAGACGGAGAGCGAAGTCAGTCCGGTCCGAGGTTACTGATAGGATCGTTACCGGCCCACCTGTCTCCTCACCTGCTCGGAGctgGATTCAACTGTCCTGTGTGTTCAAAATTTGTTGCTTCAGATGAAATTGACCTTCACCTTGTCATGTGTCTCACCAAACCGAGACTCACCTATAACGAGGATGTCTTGATGAAGGACTCTGGGGAGTGTGCAATATGCCTGGATGACATGGAACAGGGAGATACCATTGCCAGACTGCCCTGCCTCTGTATCTACCACAAAGGgtGTATTGATGAATGGTTTGAGGTGAATAGGTCTTGCCCAGAACACCCTACGGATTAAACAATTGCTAACATTGCACAGgttCTCTCATTTCATCACTGAAGACTGCACACCCTGTGATCCAGAACCTCAGTGATTTTACAAAGACCTGTCATCACCTCAGATTCACACCTGTGCCAAAAGACAATTAAAACTGACTCAGGGATCCTGcccatgtgtgatttttttt

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K10694 ZNRF1_2; E3 ubiquitin-protein ligase ZNRF1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU401922 lncRNA upstream 94122 6526395 ~ 6527094 (+) True G339279
XR_004577047.1 lncRNA upstream 123473 6494601 ~ 6497743 (+) True LOC117595844
XR_004577045.1 lncRNA upstream 126970 6493637 ~ 6494246 (+) True LOC117595843
TU401951 lncRNA downstream 13986 6648179 ~ 6651826 (+) True G339300
TU402314 lncRNA downstream 316379 6950572 ~ 6951822 (+) True G339616
TU402316 lncRNA downstream 318869 6953062 ~ 6959284 (+) True G339618
TU402366 lncRNA downstream 598691 7232884 ~ 7233107 (+) True G339659
TU402368 lncRNA downstream 613627 7247820 ~ 7250415 (+) True G339661
XM_026929411.2 mRNA upstream 5193 6604605 ~ 6616023 (+) True mturn
XM_026930162.2 mRNA upstream 49958 6539084 ~ 6571258 (+) True LOC113536295
XM_026930163.2 mRNA upstream 52117 6528408 ~ 6569099 (+) False LOC113536295
XM_026929800.2 mRNA upstream 97090 6477323 ~ 6524126 (+) True snx13
XM_026929801.2 mRNA upstream 97242 6479964 ~ 6523974 (+) False snx13
XM_026930046.2 mRNA downstream 19028 6653221 ~ 6662882 (+) False clptm1l
XM_026930047.2 mRNA downstream 19028 6653221 ~ 6662882 (+) False clptm1l
XM_026930045.2 mRNA downstream 19029 6653222 ~ 6662882 (+) True clptm1l
XM_026929412.2 mRNA downstream 29900 6664093 ~ 6666353 (+) True rplp1
XM_034298327.1 mRNA downstream 139126 6773319 ~ 6775535 (+) True LOC113536346
TU401948 other upstream 5344 6604657 ~ 6615872 (+) False mturn
TU401842 other upstream 277345 6339507 ~ 6343871 (+) False LOC113535938
TU400576 other upstream 2266187 4352522 ~ 4355029 (+) True G338163
XR_004577078.1 other upstream 4228738 2358128 ~ 2392478 (+) False LOC113546300
TU401977 other downstream 76822 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 1648767 8282960 ~ 8285204 (+) True G340208
TU403493 other downstream 2278735 8912928 ~ 8915844 (+) True sem1
TU403492 other downstream 2278780 8912973 ~ 8915844 (+) False sem1
TU403677 other downstream 2590447 9224640 ~ 9229436 (+) False bet1

Expression Profile