RNA id: XM_026929816.2


Basic Information

Item Value
RNA id XM_026929816.2
length 2158
RNA type mRNA
GC content 0.47
exon number 12
gene id ppan
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 5446993 ~ 5455237 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTATTTTTCCAACCCGTATTCCTAAAATTTCCGCCTCCTATATTATGCCCGGCTTAACTAGCCAATCAATGAGCTTGACCGTTAACCTAAACCAATCGGAATGAAGGAGGCGGGAACTGAGTAGCCAATCATAGAACAGAAGAGCGGGCTTGTCAGAATGCGGGTGGGGAAACACGCACTGGCGTGCAGCGTGGTTTCTGATGTGTGCTCCGGTTAACTAACCCTGAGGGCTAGCAACGAAAATGcggtttattattaaatagtacTCCATGTTatagtctgattttttttatttaacgtttGTTGTTTAATTTATCAGTTGAAAAGATGGGGAAAAGCAAGACTAAAAACCAGAAGAAGGCACGCGTAGCTGCCAATCACGTGGCCGAGGAGACGTACGGAAGCGTGCCACACTCCTTCGTCTTTCACCGTGGCCAGATCGGGAAGAACGTGGATCAGCTGATGATGGACATGCGGCGTGTCATGGAGCCGTACACGGCACAGTCCTTAAAGgTTCGAAAGAAAAACGTCTTAAAAGATTTTGTGACTGCAGCAGGACCATTGGGAGTCACGCACTTCCTTGTCTTCACCAAAACTGAGAACAGTGTTAACCTGAGACTGGCACGACTTCCTAAAGGCCCCACTGTCCATTTCCAGGTCACTAAGTACACTCTCATTAAGGACGTAGTTTCATCTTTAAAGAGGCACAGgatgcatgagcagcagtttactCATCATCCACTGCTGGTGCTGAATAATTTTGGGATAGAGGGCATGCATATCAAACTGATGGCTACCATGTTTCAGAACATGTTCCCTTCCATCAACGTGCACAAGgtCAACCTGAACAACATAAagaggtgtgtgttggtgaattACGATCCTGCATCTCAAGAAATAGAGTTTCGGCATTACAGTCTGAAGGTGGTCCCTGTGGGCATGAGCAAGGGTGTGAAGAAGCTCTTGCAGGAGAAGTTCCCTAACATGAGCAAACTGGAGGACATCAGTGAGCTGCTTCTGAAGGGTGTAAACCTTTCGGAGAGCGAAGCAGAGCAGGACGGCGAGCACAACATCACCGAGCTGCCTCAGGTGTACTCAGGGCGCGGGAACATGAGGTCGCAGCAGAGCGCTGTCCGACTTACTGAGattggaCCCAGAATGACCCTGCAGCTGGTGAAGATTGTAGAAGGCATGGGAGAGGGGAACGTGCTTTATCATTCTATTATGACAAAGAGCGAGGAGGAGATTCAGGAGATTCTGAGGAGGAAGGAGGCCCGTCTGAAGGAGAAAGCAGAACGCAGGAGCCAGCAGGAGCAAAACGTAGCCCTGAAGAAGGAGAAACGAGACGAAAACAAGAAAAAGAGTCTGGAGGGCATGAAGAGGAAACGGCAGCAGGAAGGGGCTGCGTCTGATGACAGTGAAGTGGAGGATCCTGGGATGCAGGAGGACCAGCCTGAAGCTGAGGAGTCGGAAGACGAGGCAGAGTATTACAGACAGGCCGttggagaggaacctgatgaaGATATGTTCCCCACTGCAAAGAGGAAACATGGCCCAGGCAAGTCACGCATGCCCTTTAAGAAGAGGAAACTGTCTATGTCAAAAGCTCCTGGTGAAGACAAATCCAGATCCAAACCTACTGGCAAGGCTTCTTTTGGTGCTAAAAACTTTGCTGGTAGGAAGTTTGGCGGGAAGAACATGGGAAAAATTGCAGCAGGAAACAAAGGATTTAGAGCGGGAAAAACGGCAGGGGTCAGCAGCCGGTTTGGGAAGAGTAAAGGAGGAAAGAGGTTTGGAGGAAACAAAGGGGAAAGGTTTGGGGAAAAGAAAAGTGGGGCTCAAAGTTCAAAGGGGAAAGGACAAAGACCAAAAACCGGCTCTGCATTTAAAGGAGGCTCGAGGGGAGGACAAACAAAGAAGGActtcaagaagaagaaggaaaaaaggtgAAGATAAAACATGAGCCAGGATCTACACAGCAGTGACTGCACTAGCAGAACGCAACTTGGTGGTGGCGATGTTGCCAGTTTGAACTGCTAATCTGCTAAAGCATCTGCGAAAAGACTGCAATCTATCTAAAGataaatttgtgttttgtaaaaatgttaatgaatgtttatTGCATTTATAGCAATAAATAATGAGTCTTTCATAAAA

Function

GO: NA

KEGG:

id description
K14859 SSF1_2; ribosome biogenesis protein SSF1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU401337 lncRNA upstream 14729 5431849 ~ 5432264 (+) True G338799
TU401215 lncRNA upstream 54801 5387988 ~ 5392192 (+) True G338683
XR_004577050.1 lncRNA upstream 60841 5377206 ~ 5386152 (+) True LOC117595846
TU401186 lncRNA upstream 205409 5241325 ~ 5241584 (+) True G338658
TU400698 lncRNA upstream 666665 4761313 ~ 4780328 (+) False stxbp2
TU401352 lncRNA downstream 69803 5525040 ~ 5526609 (+) True G338814
TU401392 lncRNA downstream 271941 5727178 ~ 5728306 (+) True G338842
TU401393 lncRNA downstream 271941 5727178 ~ 5728022 (+) False G338842
TU401536 lncRNA downstream 399421 5854658 ~ 5855430 (+) True G338961
XR_003403669.2 lncRNA downstream 520635 5975872 ~ 5981732 (+) True LOC113536203
XM_026945958.2 mRNA upstream 192730 5143226 ~ 5254263 (+) True olfm2a
XM_026945957.2 mRNA upstream 192730 5206144 ~ 5254263 (+) False olfm2a
XM_026945959.2 mRNA upstream 192730 5211366 ~ 5254263 (+) False olfm2a
XM_034298550.1 mRNA upstream 350720 5014830 ~ 5096273 (+) True col5a3a
XM_034298521.1 mRNA upstream 559648 4878316 ~ 4887345 (+) False LOC113546287
XM_034298494.1 mRNA downstream 7818 5463055 ~ 5467361 (+) True LOC113536209
XM_034298495.1 mRNA downstream 7818 5463055 ~ 5467361 (+) False LOC113536209
XM_034298650.1 mRNA downstream 15325 5470562 ~ 5472111 (+) True LOC113536250
XM_034298492.1 mRNA downstream 18705 5473942 ~ 5511202 (+) False LOC113536275
XM_034298493.1 mRNA downstream 22476 5477713 ~ 5511202 (+) True LOC113536275
TU400576 other upstream 1091964 4352522 ~ 4355029 (+) True G338163
XR_004577078.1 other upstream 3054515 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 3054521 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 3054618 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 3076917 2358116 ~ 2370076 (+) False LOC113546300
TU401842 other downstream 884270 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 1149420 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 1255778 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 2827723 8282960 ~ 8285204 (+) True G340208
TU403493 other downstream 3457691 8912928 ~ 8915844 (+) True sem1

Expression Profile