RNA id: XM_034298508.1


Basic Information

Item Value
RNA id XM_034298508.1
length 4790
RNA type mRNA
GC content 0.48
exon number 22
gene id ripor2
representative False

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 8767996 ~ 8814969 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCGCTGATTGTTTTCTTCACGCAGgagtTTCCTCCCGCTTCCCAGAGATCATGGCGGCTGGCACACACTCTCCTGGAGGGCCCAGTGGAATCATTCGGAGTCAGTCGTTTGCTGGCTTCAGCACGCTGCAGGAGAGACGCTCACGGTGTAACTCATTTATAGGGAACTCGGTAGCACAGAAGAAGTCACTCACAAAGCCCAAGAAGCCCCATCTGTGTGGGCACAagtccagcagcagcagcagcagctcacaTGAACCACAGCCTAAGAGAGTGGAGGAGGTGTATGGAGCCCTGAAACAGGGCCTGGATGAGTACTTGGAAGTGCACCAGGCAGAGCTGGACAAACTCACCTCTCTCATGAAGGACATGAAGAGGAACTCCAGACTGGGAGTGCTGTACGATCTTGACAAGCAAATTAAGACAATTGAGAGATATATACGACGCCTGGAGTTCCACATAAGTAAGGTGGATGAGTTATATGAGGGCTTCTGTATTCAAAGGAGGCTACGAGATGGCGCCAGTAAAATGAAGCAAGCCTTCACTGCTTCACCTTCTACTAAAGGGACACGAGAGAGCCTGACTGAGGTCAACCGGCGCTACAAAGAATACACAGAGAACATGAGCACATTTGAGGGGGAGCTGGAGAACCTGTTGGGAGAATTCCATATCAAAATGAAAGGTTTGGCTGGCTTTGCGAGGCTTTGTCCAGGCGATCAGTATGAGATTTTCATGCGGTACGGACGGCAGCGCTGGAAGCTGAAAGGGAAGATTGAGGCAAACTCCAGGCAGAGCTGGGATGGAGAGGAGATGATCTTTATGCCTCTAATCACAGATCTCATCTCCATAAAGGTAACCGAGCTGAAGGGGCTTGCTACTCATGTCCTGGTGGGCAGTGTGATCTGTGAGACCAAGGACCTATTCACTGCCATGCCTCAGGTGGTGGCTGTGGACGTCAATGACCTGGGCACCATCAAACTGAACCTAGAGGTCACCTGGTTTCCATTTGATGTGGAGGACCTGACCCTGTCCTCGGGTAACGTGAGCAAAGCTACTGCCCTGCAGAGACGAGTGTCAGTGTACAGCCAGGGCACGCCTGAGACCCCCACCTTCCAAGATGCAACATTCTTTTCCACATTGCCTGATGACGTTTTCGAAAATGGCGGCTGTGGTGTAGCCGAGTGCAAGCGCCTGTCCTTCACCTTCTCCGATACACCAGCTTCTAGCCCAGCTCCTGGCCAATCACATCCTGAGATCACTGTAACACCTCCTGAAAGTGACCAACCACCTCAGCTTCCTGCCTTAGATCAGCCTGGTGAGGAAGAGGatggtgaggaagaggaggagagcacCAGTGTAAGTGCCAGTCTTGCAAGCGCCAGTGAGGCAGAATCAGAGCGCGAGTGGGAGCGAGTGGAGTGTCAGCATGGGTATGAGTCCACAGCACCCTCGCTCTCCTCAGAAGGCCAGGTCTCAGCTGTGGGGCCAGAGGATGTTGTATTCCTGGAGCCTGGCAGCCATGATGAGagctcagagctgaagccagtgGAGCTGGATGGGGAGGAGGGCAGTCTGACCAGGCAGCTGGTACGGAGGCTCACTTCCTCTGATATCCTGCCTGAACCAACTACTCTGAGCTGGGCTGGAGAGAGCAGCCTGGAGGAGGCCATCCACAGCCTGCTAATGAAGCTGGAGAGCGTGGCCCAGCGCTGCCGAGAGCTTCAGGACCTcgaacaggaagtgatgaagCTGGAGGACCTGCTCAAGGGTTTAACAGCTGTTGTGTCTCCTCAGTGCCGAGGTCCTGCTCACAGGAGTCGCTCCTCGAGTCTCAGCGTGACTGTGGAGATTGCTCTAGAGAGTTTTGACTTCCTCAACACCTCAGACTTTGATGACGAAGACACTGGGGATGACAACACTGCTGTCTCACGCTCTGTATTCTTCGACATGGAGACTGAAAGGATCGGgCCAAGTCGGCATCCAGAGGCCCGAGGTCATCTGAGTGAAGCCCTGACAGAGGACACAGGTGTGGGTAACAGTGTGGCGGGGAGCCCCCTGCCACTTAGCACAGGCAATGACAGTCTGGATATGGCCATCGTTATTCATTTGCAATACTGCAACCATCTCATTCagATGTTGACTTTAGGAGGAAGCACATGGCAGAATAAGGCCTATCTGAACAAACTTTCTGTCCAAACTGAGTTGCTTGAGGAGTTAACAGAGAACAGCATAGAGTGGCTGGGAAGCATCAGCTCAGCTGctgaggTGCTGCCTGGGCTGGCAGAGCGGTCAGCGCTGCTGTCAatgtggtgtgagtgtgctggttCGGGAAGCCTGTTTCACAGTACAGTGGAGCGAGTCCTCAAACACATGCAGCAACGCTTCACTGCACCACTGCAGGAGACTCACCCTCACAGCACAGACCTGGtgATCAGGCTGGTGGTGGCTGAAATGATGGACAGGAATGAGCTCGCCTCCACCCCTTCCTTTCTGTCACAAGACGTTTTGACAGTGTTCCAGTTTTACAGCTACGCCACCAAGCACAATGTCATAGACATGGACCAACACCTGCTGGAGGTGGCCAGAGAGGCTGCATTTGCGGAGAGTTTGAGCTCTGCTGATGCTGAGTGCTCTGTAAAGGAGTTGCAGGAAATGTCCATCACTGCCCTCCAGCCCCGTACACACACGCTGCGTGTTCTCGCTGGCCTCCTGACCTCTGATAACCCTGACCTCAGCAAAGCTgcctctgcctttctctctaaCGCTGCCTCACATCCACTTTTTAGGTCAAAGgctgtgcattgctacacacaAGCCTTATCAGAAGCAGGTGCACATGCACAGAGAGCTGCTTGTCTTGCTCTGAGCTGTCTGCAGgctGTGGAGAGCATCAAAGCGGTTGTGGCACTGTGTGACTCTGCCGATGAGGAGCTCCGCCATATTGCCATACAGACCCTCCTCACCTTCGgtgAGGAGGGTCGGCTGGCATACGAGCAGTTGGACACAGTGCCAAGGGAGATGGTGCGACTGGGTACACGTCGTGGCACTGCCGTCACCACTGCCTTCTGAGAGCAGCAAGTACAAAAGCCCACATTACCGTTCCTGTGTCCAGCTGTCCCACTTATCGGGGGCACGAGAGTGTCCAGGCATTAAGAACTGAGGCACTGTTCCCCTCAAAGCCACTCTGTACCAGGGCCTGATGCATAGATCACTTCAAGCAGTAGTTATCATTTTTATGATGATCACACATTATTATTGATGCTCTTTCTGACTACCGTTTAATTATTGGTTGGTACTAGTTGAGGTTCCTGACCTTGCACTTGTCAGAGGCCTGTACATATAGCACATTATTGACGTATCGTGTGGCATATCCTACCTGAACTACCTGAGACTTGTGCTTTTCAGCTTCAGGGATTCTGAGGGACGTGTTTAATCTAACCCTCATAATTACTCAGAGTGTATATGTGAGTAAGTAAGTCCTAACTGTTATGCTTGGCTCTACACCATGTGGATGCTAATAACAGAAGCACATATCTGTTTATCCAAACCTCACATAACGTTCGTTTTGCTTTGCAGTGCCACCAATCAGCATCACACAAAGCTGTCTTGTTTGGAATAATGAACAGTAGGGTGGTGACATGGTGGTCTGCCACTAGTGACTGAAGAGGCAAGCTTCTTCAGTGTAATCCTGCAGATTAAGTATTGCATTAATATGGTACGAATGCTCTGGTGAATGGCAAGAACAgatagatgtgtgtatgtgcgtgcgcgtgtgtatgTTAAAATGCACTTTTTGGTATCTCAAGTAAGAAGTCTTAATGGATTTACTGTGAATTTGATGTTAAGCTTCAAAGAAGACTGAAAGTACAGTGCTCCGTGATCCAACTCGCTTCTGTGCCTAGTGTAACTGTACTACTGAGTCTCATTTTTAACTGTGATTTTAACTCATCTTttcatcactttatttatttttttttaattacatccatgtagcttttactttttaatcataaaattgtattgtatccacaatatactaaatattttactttctttggTATTTGTGATTACTCCCTGCaaccacacacagtgtcacattttGATGTGTTAATACTGTAGACCTTTAAGTTGTTTTATTGATCACTTGATATTGTATTATCTTTGAGAGTACTGGAGTACCAATGTGCTTAGTAAGCactgaaaatatttgtttttagtgTCTATATTAGCCTGTTATTTTGTCATCGGTCACTTCACAAATTTCTAAAGCCATAATTCACACAAGAACAATATATAACTGGCTTATTTTGTAATCTGTATCACAGAGCTTTGTACAGTTGGCCTATTTTTCCATATtagataatttttttgttgtgtccaATCTGAGTTCTATTTCCATAGTATTTTTGGACTTGGCCATCAAGGAACCAATTTAACACCAGTCTCCAAGGGATTTCTTTTGTATATAGAGTTCATGTGAGTTGTGTAATGAACATTATTCAAATCCAAGCTTACACAAACCTAGACCTAAacctcatttttaaattttcattaacAAATCCCTGAAGttctgttaaatattttagtattatttttcattCCTGGTTTGAGATTAATACATTTTGGTTAGCAGGGTAGAGGAGTGCTGTATAAAACAGCTTTAGCACAACTTGGATTTGAATGAATGCAGTACTCTGGCTCTCAAACCTATTGTATAATATCTCCATTCACTTTTGTGTTTATAATATTCCACTGTCTGCTgcaataaagtttatttttggaTAATGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU403206 lncRNA upstream 109905 8668579 ~ 8668782 (+) True G340297
TU403162 lncRNA upstream 161646 8613486 ~ 8617041 (+) True G340257
TU403151 lncRNA upstream 286773 8489679 ~ 8491914 (+) True G340248
TU403089 lncRNA upstream 367329 8399218 ~ 8411358 (+) True G340197
TU403071 lncRNA upstream 519983 8257791 ~ 8258704 (+) False LOC113536074
TU403267 lncRNA downstream 29305 8844274 ~ 8845684 (+) True G340336
TU403270 lncRNA downstream 35999 8850968 ~ 8859663 (+) True G340339
XR_004577075.1 lncRNA downstream 60988 8875957 ~ 8891060 (+) False LOC117595890
XR_004577073.1 lncRNA downstream 61982 8876951 ~ 8891060 (+) False LOC117595890
XR_004577074.1 lncRNA downstream 65339 8880308 ~ 8891060 (+) True LOC117595890
XM_026929740.2 mRNA upstream 28461 8737160 ~ 8750226 (+) False si:dkeyp-120h9.1
XM_026929643.2 mRNA downstream 5415 8820384 ~ 8824825 (+) True c23h6orf62
XM_026929455.2 mRNA downstream 24282 8839251 ~ 8843118 (+) True chrac1
XM_026929967.2 mRNA downstream 57626 8872595 ~ 8874442 (+) True dlx5a
XM_026929430.2 mRNA downstream 98011 8912980 ~ 8915846 (+) False sem1
XM_026930225.2 mRNA downstream 219493 9034462 ~ 9053330 (+) True pdk4
TU403100 other upstream 493483 8282960 ~ 8285204 (+) True G340208
TU401977 other upstream 2061541 6711015 ~ 6717146 (+) True G339324
TU401948 other upstream 2162815 6604657 ~ 6615872 (+) False mturn
TU401842 other upstream 2434816 6339507 ~ 6343871 (+) False LOC113535938
TU400576 other upstream 4423658 4352522 ~ 4355029 (+) True G338163
TU403493 other downstream 97959 8912928 ~ 8915844 (+) True sem1
TU403492 other downstream 98004 8912973 ~ 8915844 (+) False sem1
TU403677 other downstream 409671 9224640 ~ 9229436 (+) False bet1
TU404551 other downstream 1659514 10474483 ~ 10481970 (+) True G341451
TU405030 other downstream 2477355 11292324 ~ 11294030 (+) False smim12

Expression Profile