RNA id: XM_026929831.2


Basic Information

Item Value
RNA id XM_026929831.2
length 6572
RNA type mRNA
GC content 0.51
exon number 44
gene id clasp2
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 12556877 ~ 12606358 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGACCCCGCGGCCTCTCGGCCCTGCTGTCCGTTTTGTTCATTAGCGTCCGCTGCCTGTACATAGCAGGCCGGTGTGCTGACCGGGGGAGggctgagtgagtgtgtgagcgagagtgtgtgtgtgtatgtgtatgtgtgaggcaGCTGTCggagtgttgattattttgggAATAAGTGTAACTGAAAGCTAGGAGGAGAGGACAGCGCCACGGTTAGGACACACCGGGGCTCCGCGCAGACAGCAGCAGGGTGAAAAGCGGGCTTTTCTGAAAATGGAGACGAGCAGTGAAGAGAGGCCAGGAGGCAGGCCCGAGGCCAACCAGCCATAAGTTTAGCCAAGCCAGCCatacagctagctagcaagctagcattTTGTAGCCGAGGTAAACAGAGATTCAGCTACCGAGGCTAGCGAAAACGATACAGTTCCTGCTTTTGATGAGCATCTCTGTGGTCTCGGTACGAGAGCGAGTCATTTCTTCAAGTATTCCGTTTGTATGTgtgactttattattattataatttttttgtagaaccatttttgtccatttcatACCTTTCAAACTTCtctgaagttgtttttttttctttagcgtGGGCTCCAAGTTCTGCATTTCAGTCAAACTCAAACTTGCCTGTAGTGTGGACTTTACACGGCTAAGCTGTTCACCAGCTCTTTTTTGTCCCAGTCTTTTATGTACTGTGACATTATTTGGTCTATTTGTCGGATTTTGTCGGCTTGTTTTCCTGTAGACCAGGACCTCCTGACCTGACCTCAGCTCTGGACTTGGTTTTTAGCTTAGTGAGCAGCTCCTGCTTCGGCTTTGCTACACAGGCATGGAGGAAAATGACAACATGGACTATTTTTACCAGCAAGTTTTGCAGAAGGATGTGAGCCGGCGGCTGCAGGTCGGTCCCGACCTCATCGACTACCTGAGCGACCCGCAGCGATCCTCGGACGTGGAGCAGGACAAACCTCGCCTGGATAAAACCATAGACGAGCTCACGGGCTGGGTCAACTCCAGCAATTACAAGGTTGCCTTGCTGGGGATCGATATTGTCAGTGCGTTTGTCGACCGGATGAGCGATCGCTTTCGAGGTTATGTAGGCACAGTGGTCCCTGCATTAGTGGATCGTCTGGGTGATGGGAAAGATCAGGTACGAGATCAGGCACAGACGCTCATTCTCAAGCTGATGGAAGAGGCAGCCACTCCCATGtATGTTTGGGAGAGGTTATTCCCTGCCTTCAAACACAAGAACTTCCGAAGCAGAGAAGGACTGTGTCTGTGCCTGGTCGCCACACTCAACGCgtACGGTGCCCAGCCATTGAGTCTGAGTAAATTTGTACCGCATCTGTGTACACTAACAGGAGACCAGAACCCTCaaGTACGGGAGACCGCCATAACAGCTCTGGTTGAGGTGTACCGGCATGTAGGCGAGCGAGTGAGGGCAGACCTGGGCAAGAGAGGACTGCCAGCTGCACGATTGCAGACCATTTTAGGCCGATTTGATGAagtgctgaattctggaaataTGGCTCTCAGCCTGAGTCAAGatCGTAGCTTTGATGACGATGACTCGGTGGATGGTAGCCGGCCCTCGTCAGCCCAGGCAGCTTTCAAAGTCCCCAAAGTGCCGAAGAAACCTGCAGATTCAGCCAGCAGCTCCAGAAGACCCAGTGCTACTGGAGCCACCAAAATGAGTGTGTCTAAAGAGGGAGCAGGAGCTGTAGATGAGGAGGACTTCATTAAAGCATTCACAGATGTCCCCACTGTTCAGATCTACTCCACACGTGATCTGGAGGATAATCTGAACAAGATACGAGAGATTCTCTCTGATGATAAACATGACTGGGATCAGAGAACTAATGCATTGAAGAAGATCCGATCTCTGCTGGTCGCAGGAGCAAAGAACCACGACTGTTTCTACCAGCACCTGCGTGTTCTGGACGGAGCGTTTAAGCTTTCAGCTAAAGACCTGCGATCGCAGGTGGTGCGAGAGGCGTGCATCACTGTGGCGCACCTGTCCACAGTGTTGGGGAATAGATTTGACCATGGAGCAGAGGCCATCGTTCCTGTGTTGTTTAATCTTATTCCCAACTGTGCAAAAATAATGGCAACCTCTGGCACAGCAGCAATTCGCATCATTATACGGCATACACATGTGCCGCGGCTGATTCCTCTCATCACGGGAAACTGCACTTCAAAATCTGTGGCTGTAAGGAGACGCTGTTATGAGTTCCTGGATCTGCTACTGCAGGAGTGGCAGACACACTCTCTGGAGAGgcaTGCAGCAGTTTTGGTGGACAGCATTAAGAAGGGAATCAGAGATGCTGACTCAGAGGCTCGAGTGGAGGCCAGAAAGGCCTACTGGGGGCTGCGGTCTCACTTCCCCACGGAGGCGGAGTCTCTGTATAACTCGTTAGAATCGTCGTATCAGAAGACGCTTCAGTCGTGTCTAAAGAGCTCGGGCAGCGTGGCATCACTCCCACAATCGGATCGCTCCTCCTCCAGCTCACAGGAAAGTCTCAATCGGCCGTTGCCTTCGAAATGGTCAGCTGCTCCAGGCAGAGTTCCAGCCAGCTCCAAGTCATCAGGCTCACCAGTTTCCCTGCAGCGATCTCGGAGTGATGTGGATGTAAATGCAGCAGCCAGTGCTAAGGCCAGACATAGTGGACAGGCAGGAGGAGCCGGCCGACTTACTACGGCTTTACCCCCAGGCACCTATGCCTCACTAGATGATGCCTCTGATAAGGATGGCCGACTACGTGCTAAGCAGCCATTGTCAACTCCATCAGGAATGAGCAGCAGTCAGGTGGACTCAAGGGCCCGGAGCCGAACAAAGATGGTATCTCAGTCCCAGCGTTCCGACGATTCTGATTGCACGCCAGGATCACAGTCTGCTACACCTTTTGGTGCGGGTTCTCGCTCTGGCTCTCCAGGCCGTGTGTTGACCAGCACAGCTTTGAGCACACTCAGTACAGGCGCCCAGCGGGTGAGTGCTGCTCCAGGCTCCCAGCGGCGCAGCAGAATCCCACGCAGTCAGGGCTGCAGCCGAGATTCAAGCCCCACCCGCCTGTCCGTGGCGCCATCCAACATCAGCCACGTCTACAATGGATCGAAAGGAGCACGGGGTAGTCGTATACCGCGGCCTAGTGTGAGTCAGGGCTGCAGTCGTGAGGCCAGTCGAGAGAGCAGCAGAGACACCAGCCCTGTGCGCTCCTTCACGCCGCTTGcttCACGACACTACTCTCGCTCTACTGGTGCTCTTCATGCTCCAGATGCCTTTGGGGCAGCAGgttCGGGTTTGGGGATCTCTCAGTCCAGtcgtctctcttcctctgtcagTGCCATGAGAGTGTTAAATACGGGGTCAGACGTAGAGGAGGCCCTCGCTGATGCACTGCTGTTAGGAGATATGCGGAGCAAGCAGAAGAAACCAGCTCGGCGGCGGTACGAGACCTACGGCATGTATTCTGATGACGATGCCAACAGCGATGCATCAAGTGCTTGCTCAGAGCGTTCATATAGCTCACGCAATGGCAGTATTCCCACGTACATGCGTCAGGCGGAGGATGTGGCCGAAGTGCTTAACCGCTGTGCCTCGGCCAACTGGTCCGAGAGGAAAGAGGGGCTGATGGGATTACAGGCTCTGCTAAAGAACCAGCGTGCTCTCAGCCGAGTTGAGCTCAAGAGGTTGTGTGAGATTTTTACCAGGATGTTTGCAGACCCTCACAGCAAGCGTGAGTCCAGAGGCTTCGGCACGGCAGAATCCGGTATCAGTTCCGCCTCCTTTAAGAGAgtgtTTAGCATGTTCTTGGAGACACTGGTGGACTTCATAATGGTTCATAAGGCAGATCTGCAGGACTGGCTGTTTGTGCTGCTTACACAGCTACTAAAGAAGATGGGCGCTGACCTCCTCGGCTCTGTACAGGCCAAAGTACAGAAAGCCCTCGACGTCACAAGGGAGTCTTTTCCTAATGATCTGCAGTTCACAATTCTCATGAGATTCACCGTAGACCAGACACAGACACCCAACTTAAAGGTGAAGGTGGCCATTTTGAAGTACATAGAGACCCTGACGCTACAAATGGAGCCACAGGACTTTGTGAACTCCAGCGAGACCAGACTTGCAGTCTCCCGCATCATCACATGGACCACGGAACCCAAGAGCTCTGACGTCAGGAAGGCAGCCCAGTCTGTGCTGATTGCACTGTTCCAGTTGAATACACCAGAGTTCACCATGCTTCTTGGTGCACTACCTAAAACCTTCCAAGATGGGGCTACCAAACTCCTTCAGAACCACCTACGCAGCACTGGCGGCGTAGCACCAGCCCCAGTGGGTAGCCCCCTGACACGACACACACCGAGGTCACCAGCCAGTTGGTCTAGTCCTCTAACATCCCCTACCAACACGTCACAGAATACGCCTTCCCctagTGCATTTGATTATGATACAGAGAATATGAACTCGGAGGAGATCTACAGCTCTCTGCGTGGCGTTACCCAAGCCATCCAGAACTTCAGTGTGCGGAGCCAAGAGGATATGACTGAACCTCCTCGCAAAAGGGAGGGAGACGGAGAAGAGggTGGTGCTGAGACTACGGATACTGGTCGGACAGCCCTGGATAACAAAACGTCTCTGCTGAACACCATGCCCCTCCTCTCCTCTAGTCCCCGCCCAAGCAAGGAGTATCAGCCAGGTAGTTACTCAGACTCTTCCTTCGGCTCCTCCCCCTTTAGTAAGAGCCTGAAAGATGTACTGGACCAAGACGGCGAGGGCCTTACGGATGATAGCAGTGTGGACCAGTCAGAGGTGGTGGCCGAGCTGTTAAAGGAGCTGTCCAATCACAGCGAGCGGGTGGAGGAGAGGAAGGCAGCGCTCTGTGAACTCATGCGGCTGATCAGGGAAACACAGTTGCACGTCTGGgatgaacattttaaaactattctcctgctgctgctggaaaCCCTGGGGGATGGAGAGCATGTGATTCGTGCACTGGCACTGCGGGTGCTGAAGGAGATTTTGAACAGGCAGCCCTGGCGCTTTAAGAACTATGCAGAGCTCACCATTATGAAGACCTTGGAAGCACACAAAGACCCACACAAAGAGgtgaTCCGAGCAGCAGAAGAAGCAGCGGCCATGCTGGCAAGTTCCATCAGCCCGGAGCAGTGCATTAAGGTGTTGTGTCCCATCATTCAGTCTGCAGACTATCCCATCAATCTGGCTGCCATCAAGATGCTCACCAAAGTAATTGAGCGACTGCCCAAGGAAAGTCTGCTCCAGATGCTGCAGGAGATTGTCCCTGGACTCATTCAGGGTTATGATAACTCTGAGAGCAGTGTACGGAAAGCTTGCGTGTTCTGCCTTGTTGCCATCTATGCCATCATCGGGGAGGATCTCAAACCTTACCTCAGCCAACTGTCTGGCAGCAAGCTGAAGCTGTTGAATCTGTATATAAAGCGCGCTCAGAGTGGCTCCAGCGGAAGTGACCAGTCGTCAGATGTGGGAGGTCAAGGCCTGTAGCTGAGCCCACGGGACTTTGAGGGCAGGAGCCCTAGCAGGCTTTTTAACATGCATACAAACACTCAGACCGCTATAAACTTACACAGGcttacagatacacacatgcacacacaagtaTGGACTTGCACTGCTGGACACCTTCCTTTGCCCCTCCCCTACCTTCCAGCTGCGGTCTGAAGCCATGTGGGGCAACGTGGATCAGATTCCAACACTTCCTGTTAAACcgaattcttcttctttttgtgtGAGCATGACTCATTGTGGTGCTGGTGGTAAGCTTTGgtaacaaagtgtgtgtgtctgtgtgagagagagtgcgtgagtgtgtgagtgagagaacgAGCGAGAGCAAGTTTACTTACCTGTTAAAATCCCAGCAGTGAGATAAAAAAGGAGAGAGGGGAGGCTTTAGGTGTCACTCTGCAATATCAAGATCATTTCTTTAAGATCAAAGAGCTTCTGAGGAAACTCAGATTCACAAGATGCAACTCAAAACTCTGAGCAACAGAATCTGAGCAGAAATTTCATTACCAGTGCTTACAGCTCTTTGATTATTAATGGTCGTATCACTTCATAACACTGAATGGTTGGTTCAGCTTGCTCTATTATATGGCATACTTTGCTTGGCTATCTGCATGTCATGATTAAAACCAACCCTTTTTATCTGGTCACCTGTAGGACTTAATGGGTCTGGTGACCCACTCACATGTCCAAGGTTTGTGTCGCAGTTGGACTGCGAAGCCAGATGTCATTTGAATACATAGGCAATATGTATCTATACAACACAACAAGAGTATTCGAGAAAAATCTTGTGTTATTTGGAGGGCGTGTAGATTCTTTTAAGTAGCATAGTGTCATTTCTTCTCCGAAGGGAAatttgtagaaatgtatttacgCATTCTAATGGAAAAACTGATGTGtgtctttctcctttctgtagtttctctttctcccctgtGAGGAAATCGTTTCCTCTGGTTTCCCCACTGCATTTCTAAAGCTATGctaacaataaaatgaaaataaaaaatgtacagacATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU405899 lncRNA upstream 397 12556269 ~ 12556480 (+) True G342617
TU405838 lncRNA upstream 12143 12495042 ~ 12544734 (+) True G342589
TU405844 lncRNA upstream 51682 12502821 ~ 12505195 (+) True G342595
TU405841 lncRNA upstream 58411 12497908 ~ 12498466 (+) True G342592
TU405788 lncRNA upstream 80614 12474344 ~ 12476263 (+) True G342546
TU405904 lncRNA downstream 42137 12648495 ~ 12648717 (+) True G342621
TU405912 lncRNA downstream 68783 12675141 ~ 12675351 (+) True G342627
TU405913 lncRNA downstream 70490 12676848 ~ 12677197 (+) True G342628
TU405914 lncRNA downstream 72757 12679115 ~ 12679330 (+) True G342629
XR_004577006.1 lncRNA downstream 77775 12684133 ~ 12687213 (+) True LOC117595825
XM_026929603.2 mRNA upstream 2524 12531305 ~ 12554353 (+) True fbxl2
XM_034298517.1 mRNA upstream 2524 12533252 ~ 12554353 (+) False fbxl2
XM_026929465.2 mRNA upstream 43716 12507389 ~ 12513161 (+) True crtap
XM_034298562.1 mRNA upstream 83998 12462745 ~ 12472879 (+) True si:dkey-166k12.1
XM_026929517.2 mRNA upstream 83998 12462771 ~ 12472879 (+) False si:dkey-166k12.1
XM_026929919.2 mRNA downstream 3142 12609500 ~ 12631952 (+) True ubp1
XM_026929705.2 mRNA downstream 28392 12634750 ~ 12647260 (+) True pdcd6ip
XM_026929706.2 mRNA downstream 28392 12634750 ~ 12647260 (+) False pdcd6ip
XM_034298401.1 mRNA downstream 43859 12650217 ~ 12665069 (+) False arpp21
XM_026929426.2 mRNA downstream 43860 12650218 ~ 12665069 (+) False arpp21
XR_004577055.1 other upstream 741604 11810109 ~ 11815273 (+) False sostdc1b
TU405031 other upstream 1262521 11292324 ~ 11294356 (+) True smim12
TU405030 other upstream 1262847 11292324 ~ 11294030 (+) False smim12
TU404551 other upstream 2074907 10474483 ~ 10481970 (+) True G341451
TU403677 other upstream 3327441 9224640 ~ 9229436 (+) False bet1
TU405918 other downstream 85667 12692025 ~ 12695512 (+) False fabp3
XR_003403671.2 other downstream 179479 12785837 ~ 12792473 (+) True LOC113536228
XR_004577016.1 other downstream 298265 12904623 ~ 12951963 (+) False si:ch211-199g17.2
TU406031 other downstream 470812 13077170 ~ 13081229 (+) True G342718
TU407134 other downstream 1599378 14205736 ~ 14219690 (+) False slc30a8