RNA id: XM_026929890.2


Basic Information

Item Value
RNA id XM_026929890.2
length 1414
RNA type mRNA
GC content 0.42
exon number 6
gene id cfap20
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 5669692 ~ 5674191 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGTGGAGAAAAAAGCTGCGCGAGCTCGAGTGAGGTTGCTGTGGAGTTTTGAACATAGAGAGAGCTAATGCGCGTTTCGACTAAATTCTGACTAATTCCTCAAGGAACTCTAATATTGTGTGACACATACAGACTTAGGAAAGAACTAGAACGAGAGAAAAGCATACTGAAATTAGTGTTGAGACATTCCTTGTTAAGAAGTTTTCAAAATAGAAAACCTTTGGCGATTTGTTGCGGAATAAgatattttgtcttttgttgtgGAACGCTTGCTCGGGAACTTGTTGCTACCCGGAGGGGTTATTCAGGGCGCAAGTACAGGCTGCTAGGAGCGAAGCGCTGTAAACAGAAGCGCGGTTACATGTGTTCTTTATAAAATAGATAAAGCAGGGTTCTGAAAATTTTGAGTTATGTTTAAGAATACATTTCAAAGCGGCTTCTTGTCCATTTTGTACAGCATTGggagcaaacctctacaaataTGGGATAAAAAGGTGAGAAATGGACATATAAAGCGGATTACGGACAATGACATCCAGTCATTGGTGCTTGAGGTGGAAGGAACCAATGTCAGCACGACCTACATCACATGTCCTGCAGATCCAAAGAAAACCCTGGGCATCAAACTTCCCTTCCTGGTCATGATAATCAAGAATCTGaagaaatatttcacatttgaaGTTCAGGTATTGGATGATAAAAACGTGCGGCGAAGATTCAGAGCCAGTAACTACCAGAGCACCACACGGGTGAAGCCCTTCATCTGCACCATGCCCATGCGGCTGGACGACGGCTGGAACCAGATCCAGTTCAACCTGTCCGACTTCACACGAAGAGCTTACGGCACCAACTACATCGAGACGCTGCGAGTACAGATCCACGCAAACTGTCGCATAAGAAGAGTGTACTTTTCTGATCGACTGTACTCCGAGGACGAGCTCCCGGCAGAGTTTAAACTTTATTTGCCGGTGCAAAACAAAGCAAAGcagtaaCGTGGCACATCTGAACCCTTCCTTCACTCCAAACCTGTTTTacctgcagttttttttctcctcaccaAATTTCCAGTCATGTGACTTTGCcttgtttagttatttattttttttttgtgttgtatgTTTTACATGCACCGTGTGAGGTGAGAATCCAGAgcaaagagaataaaatattcTATTACTTTAATACGTGTCACTCGTGTAGAACACATGAAAGACGTCATTGGCTTGACcagctttattttttcagcTGCCACAATGGAGTCTCAGTGCACCGGTAGGAACGTAGCATTGTGTCTTTAATTCCACATTCATTTTCAAATCTGTACAGCATCTTGTTAAAGGTTGTGGGGTGAAAATGGTATTTATAGAACTTTTTTTGTCACCTCTCACTAAAATAAACCTCTTATAAAACCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU401352 lncRNA upstream 143084 5525040 ~ 5526609 (+) True G338814
TU401337 lncRNA upstream 237429 5431849 ~ 5432264 (+) True G338799
TU401215 lncRNA upstream 277501 5387988 ~ 5392192 (+) True G338683
XR_004577050.1 lncRNA upstream 283541 5377206 ~ 5386152 (+) True LOC117595846
TU401186 lncRNA upstream 428109 5241325 ~ 5241584 (+) True G338658
TU401392 lncRNA downstream 52987 5727178 ~ 5728306 (+) True G338842
TU401393 lncRNA downstream 52987 5727178 ~ 5728022 (+) False G338842
TU401536 lncRNA downstream 180467 5854658 ~ 5855430 (+) True G338961
XR_003403669.2 lncRNA downstream 301681 5975872 ~ 5981732 (+) True LOC113536203
TU401647 lncRNA downstream 313620 5987811 ~ 5988492 (+) True G339055
XM_026929494.2 mRNA upstream 677 5665172 ~ 5669016 (+) True oxsm
XM_026929637.2 mRNA upstream 11494 5632327 ~ 5658199 (+) True LOC113535991
XM_034298744.1 mRNA downstream 30480 5704671 ~ 5721562 (+) False zgc:63863
XM_034298742.1 mRNA downstream 30481 5704672 ~ 5726395 (+) True zgc:63863
XM_026929973.2 mRNA downstream 253515 5927706 ~ 5944224 (+) True slc39a4
XM_026930094.2 mRNA downstream 426355 6100546 ~ 6109043 (+) True LOC113536255
XM_026930200.2 mRNA downstream 437910 6112101 ~ 6116707 (+) True LOC113536325
TU400576 other upstream 1314664 4352522 ~ 4355029 (+) True G338163
XR_004577078.1 other upstream 3277215 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 3277221 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 3277318 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 3299617 2358116 ~ 2370076 (+) False LOC113546300
TU401842 other downstream 665316 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 930466 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 1036824 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 2608769 8282960 ~ 8285204 (+) True G340208
TU403493 other downstream 3238737 8912928 ~ 8915844 (+) True sem1

Expression Profile