RNA id: XM_026929909.2


Basic Information

Item Value
RNA id XM_026929909.2
length 2493
RNA type mRNA
GC content 0.43
exon number 5
gene id sync
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 11768970 ~ 11773563 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aGCCTAAGTTGCCTGGGTGACTCGGCAGTCTGGGAGAAAGAAACCAGATGTCCCGTGTCTCTCccttattttctgacttctactgGCTCTTTCTCACTACTTGGATATTGCACTGAGACTGTCGGGGAAAGAAACCTAATGACCGTGGTAACAAGCTGAAAATGGCTGACGAAGATATTGACTTGGAGGAACCCTGTGGGTCTTTTTCTGAGCCCAAGGAAAAACATAATCCATTATTTATtgaggaagatgatgaagacTACTTTGAAGATTGCTTGGAGGAGATAGAGGCTGCCCTTGCTCTTCCTGGTGATTCCATGTCCTATTCACAGAAATGTCAGGAACATTTGAATGCTGAATTTAATGTACTTATGAGACAGATGCTGGCACAGCTAGATGAATTTGAAGCCACCCATGAGACCAAATCTACTCTACCAGCTTTCTTCGCAGAAAGAGAGAACATGTTAGTAACAAATTGCTTCAACGATAGTGGCGAGTATGAAGACTATATTTCAGACACAGCAGAATCTATGGCAGTAGTTGAGCCCGAAGGCGGCACTGTTGAAACAGGACCAGAGCTGTCTGCAACCACGGAGCTAAAGGAGCTGGGGACAACTTTTGAGAGCTGCATTGAGGAGGTGAGCCGACTAGAGCGCAGGAAAGAGGAGCTAGTGCAGGAGCTTTTGGAGCTGGAGAAGCCCATGGAGGAGGAGACTCATGCTTTGAGAAGAGAGCTGGAGGAGGCCCAGAAGCTCCTGTCCAAGGCCAAGCTGCAGAAGCAGAATTTGCTGGATGAGATGCGACTCTTCAAGAGACGCTTGTTTGTTGCTGCCAGGGACTGTGCACAGAGCCAGATGACCTTGGTCATACAGCAGAAAGAAGTGGAGCAGCTAAAGGAAGAACAGGATGAGATGAAGGCCTTTGTTGAGAAGTTAATAAAAGTCATTGAACAGCTTCATTCTGAACACCAAAGCCAAGTGCAGGCCCTACAAAATCAGATGGACAACATGACCCAGGAATCCAGCAAGGACAAGACACACTCGTACCTGTCCCAAGGCCGACGTGCATCCCTCGACCTACAGCAGTACCTGCAGGGTGGAATCAAAGCACTGGAGGAGTGGTATGAGCCCAGACTGGTGGCCTTACTAAAGAGACGACAAAGCAGCACTGATGCTTTAATAAAGTACAGGGAGCAGTGCCAAGAGCTGAAAACCCAACTGGGGCCCCTAAAAGAGGAAGAGCAGAGGCTGGGACTAGAGAGGGCCCGACTGGAGGAGCGCATTCATCTGATGGAGAAGCAGAGAAAGGAAAATGTGGAGCAATACCGTgaAACAATAGACCGCCTAGAAGAGAGCAGCCGAGAACTGAAAACCGAACTTCAgatacaaataaataagataaaagaGATGGAGGAACTCAAGAACAATCTGGCCAAGCAACTATACTTCTATAGagAGTGTGTAGAGAGACAACAACCTCAGGAGATCCTACTGATGGAAGAGAAAACCTGATCGATGAAGACGAACATTGCCCAACGTTGCACAGTTTGGTATTAGTGACAGAAATTCTTCTTGGTGTTTCTACAGTATGGTCTGATTGTTTAattctgaaatgtaaataatctCTCATTGCTCTGCCATAATGTTAACAGCATAAACATGCATGTGGGTGCCCTTTATAAATATTCCAAAGCAGGCAGAAGGTAATATGAAATGTACCAGCACCACTCAGCCTCTCTACAATGTCACATCAGCAAGGAATGTGAGATGGAGACTGCCCAGATTTTTATCTGCCCACTTAAACAGAACTCTCTAGATGTACCTGCACTGCTGACAGGGATGTGAGTCAGAGTGGAGGAAATAAAGCTTTTATACACAGTCTGAGTGCTAGTGACTTGTCTTGACCACATGATATGACCGCAAATAAGATGAGACACGAGAGAACATGGACTTATTAGGGCATGTTCTCAGACCTCTGAGAACATGCTGTCTGAATGACGCCGAGCAGGTTTAGATAAGCCTCAATAATAAGACGGCTGAAGCACTTTATTATGATCAGTATGAACATacttaaataaatcaaaatgtttGAGCCAAATGGTATAATCATTATTATGGCAGTTCGATGAAAAACAGTTTATTCTCAATGTTCTGTACAACAGTGTGGACATAAAGAAagacactgaaaaacacaaaatgatttTAGAATATTAAAGACAATAACATGACATTAGACCATTGTTGAGGAAAAGTACAAAATTAAGAGTACACAAGTCACCCTGTGGACCCTTGATAACATTTGCTTGAATGACTCCATTTTCAgccatgtaaaaataaatctaaaataagtCACCTACTGACATCCACCACAATTTGACCATGGTAATTAAGTACGTGGGCCTAAGcatcttttgattttaattttacatcCTTTTACCCACAACAACGCCTTAGAATGTGAAGGCTATGggataaacatttaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K10377 SYNC1; syncoilin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU405239 lncRNA upstream 179745 11589018 ~ 11589225 (+) True G342079
TU405227 lncRNA upstream 185115 11583642 ~ 11583855 (+) True G342067
TU405043 lncRNA upstream 294991 11385036 ~ 11473979 (+) False G341890
TU405042 lncRNA upstream 294991 11459087 ~ 11473979 (+) True G341890
TU405046 lncRNA upstream 432702 11334319 ~ 11336268 (+) False dlgap3
TU405371 lncRNA downstream 8703 11782266 ~ 11784980 (+) True G342190
TU405369 lncRNA downstream 13510 11787073 ~ 11797795 (+) False G342189
TU405370 lncRNA downstream 14183 11787746 ~ 11792642 (+) True G342189
TU405392 lncRNA downstream 89683 11863246 ~ 11930057 (+) True G342208
TU405533 lncRNA downstream 502183 12275746 ~ 12275952 (+) True G342333
XM_026929625.2 mRNA upstream 53149 11706658 ~ 11715821 (+) True yars1
XM_026929626.2 mRNA upstream 63853 11690437 ~ 11705117 (+) True mfsd2ab
XM_026929711.2 mRNA upstream 199027 11541503 ~ 11569943 (+) True fam49al
XM_034298527.1 mRNA upstream 295647 11334328 ~ 11473323 (+) False dlgap3
XM_026930076.2 mRNA downstream 24493 11798056 ~ 11806421 (+) True LOC113536236
XM_026930095.2 mRNA downstream 36546 11810109 ~ 11815273 (+) True sostdc1b
XM_026930030.2 mRNA downstream 59027 11832590 ~ 11841066 (+) True meox2b
XM_034298654.1 mRNA downstream 95652 11869215 ~ 11871010 (+) True LOC117595868
XM_034298362.1 mRNA downstream 173787 11947350 ~ 11968642 (+) True si:ch211-57n23.4
TU405031 other upstream 474614 11292324 ~ 11294356 (+) True smim12
TU405030 other upstream 474940 11292324 ~ 11294030 (+) False smim12
TU404551 other upstream 1287000 10474483 ~ 10481970 (+) True G341451
TU403677 other upstream 2539534 9224640 ~ 9229436 (+) False bet1
TU403492 other upstream 2853126 8912973 ~ 8915844 (+) False sem1
XR_004577055.1 other downstream 36546 11810109 ~ 11815273 (+) False sostdc1b
TU405918 other downstream 918462 12692025 ~ 12695512 (+) False fabp3
XR_003403671.2 other downstream 1012274 12785837 ~ 12792473 (+) True LOC113536228
XR_004577016.1 other downstream 1131060 12904623 ~ 12951963 (+) False si:ch211-199g17.2
TU406031 other downstream 1303607 13077170 ~ 13081229 (+) True G342718

Expression Profile