RNA id: XM_026930031.2


Basic Information

Item Value
RNA id XM_026930031.2
length 2180
RNA type mRNA
GC content 0.39
exon number 6
gene id abitram
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 10042424 ~ 10047887 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAGAGTGAATTTATTTGGAATTCAGCCACAGAACTCTGTGTTTATTCCGCATAACTGTTCCTTTATCGTCTTGTCAGTTCGTTTCTTTTCTAATAAGCcttttaataaagatttttaataaataaagacaacgaaataattatattttcagtttattGAGCACTTATGAAACGCAAAGCGCCTTTTTAGAGTTATTTCAGAAGCACAACGTCTATGTTTCCGACCGGTTCCTAATAACGGTTGGACACAGGGTGCAGGCTGCTTTGTGGTCCGTAATGGAAGCCGGTGTTTGGAGAGAGTATTAGTTGGTGTATTTGGTATTTGCGATGGCAGAAACACATGAGAGATCTCCATCTGTGATTGATCGCTATTATACACGATGGTATAAAACAGATATGAAAGGAAGATCGTGTGAAGACCATTGCATCCTACAGCACTCAAACAGgatcTGCATCATCACTCTTGCGGAGTCTCATCCCATCCTCCAGCAGGGCCGCAAAATCAAGAGCATCGATTACCGTATCAGTGACGGATGCAGCCGCCTGAACAACAAAGTATCTGGCAAATCAAAGCGAGGTGGTCAGTTCCTGACAGAGTTTGCTCCGCTGTGTAGAATAACGTGCACAGATGACACTGAGTACACCATCTTCAGCTGTATCAGAGGACGCCTCTTAGAAGTCAATGAAGACATCCTGAAACGTCCTGATCTGCTGCTGGAGAAGCCCTCCACTGACGGCTACATAGCAGTCATCTTACCCAAACTGGAAGAGAGCAAAACCATCACCAAAGGCCTTCTGACCAGAGAACAGTATGAGGACGTTGTCTCTAAACGAAGTACTCAACCGCAAGAGTCTCTCTGAAATCAACGTTACACAAATGACctcagcaaaaaagaaaaaatttaagATGACCAAGACTAAAGAACATTTTCATTTGATCcagtatatgtttatatttattactattttttattactattatttagttttgtactggatacaataataataataataataataataataataataataataataatgtagccAACACTGACTTGTTCCACCTTTTTGTATTGGGGCCAAATAActgatttaaataatttgaaatagTTTGAAAGATCTGACTAGTTAGCAGGATCAGACGTTTATTTGGACTTGCCAATGTTGGGTCAATTTGGTTATTACATGATGTGTATATTACCATAtttgcgcgcgcacacacacacacacacacacacacacacacaagattttgtaaatacacaaataaaggACACTGTCCacaatttaagaaaaataatgtatatttagACTTTCTTTGTTTAACAATCATTCAACTGTCAAAAGGATCCAAATGGTCCAAAACTAGTTTCACTCATGTTCATAGTTTCTCAGTCATCACTAAAGCTTACAGTCTGACTGCAGTGTTCATGAAACGACAATTACGAGCGTGTTCTGAAACTTCACACATGAACAGATACGTTTTGGACACTTCACTCAGCTTCCAATCATAACAAGTGAGACGTGAGGCAGAGAGGAAACGTAAGATTGTGCCGTCTGAACCACTCACTCCAAAGCAGTCAAGTGTTTTGATTTTCAGAAAGTCTTCATCCTGACCGTTTGGAGTTACTGTAGCAGAGCTCGGCATATTTCATGTTTCAAGTAACAGTATGAATCACAGTGACCTACAGGACAGTCCATATGAGGAGGCAGTTACTGTCACTacaattacacaaacaaaacttcCTTTTAATACCATAAAGATCACTTTTATACTAAAGTGACATTCTTCAGCACTGCTTTGCGGGAACACAGTAATTTTCGGCACGTTGGAAACATGAAGCCCGTGACATGGTGCCTCACGTCCTGGTGCTGACAGCCTGAGAGACGACGGAAACTGGACGTATTTGGCGTCAACGTGTAAATGAGGCAGATGCATTAAatacagtgtgtcagtgtccTACACTAAAACAACCGAGGAGGATTTCACTTATAATTCAAGCTATTCTGTTAACACGATATCACTTAGTGAAAAATATAGACTCCGTCTTAGCGGTAGCTTTTTTAACAGTAGTAAATAGCAGGGCAGTTTGGAATTGACCCCAAAACATGCACTGATTTatgtgaagagaaagagaaagtgtgtttctgttttttgttttgtttttttggtg

Function

GO:

id name namespace
GO:0006546 glycine catabolic process biological_process
GO:0005960 glycine cleavage complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU404103 lncRNA upstream 311455 9728928 ~ 9730969 (+) True G341038
TU404020 lncRNA upstream 373196 9627788 ~ 9669228 (+) True G340967
TU403973 lncRNA upstream 476898 9557697 ~ 9565526 (+) False LOC113536134
XR_003403660.2 lncRNA upstream 482051 9557738 ~ 9560373 (+) True LOC113536134
TU403683 lncRNA upstream 795376 9246479 ~ 9247048 (+) True G340687
TU404499 lncRNA downstream 145889 10193776 ~ 10197002 (+) True zgc:91910
TU404568 lncRNA downstream 350323 10398210 ~ 10398409 (+) True G341468
TU404570 lncRNA downstream 351066 10398953 ~ 10399867 (+) True G341469
TU404547 lncRNA downstream 389517 10437404 ~ 10458143 (+) True G341449
XR_004577048.1 lncRNA downstream 398441 10446328 ~ 10447955 (+) True LOC117595845
XM_026929439.2 mRNA upstream 35892 9822703 ~ 10006532 (+) True gabbr2
XM_034298365.1 mRNA upstream 35892 9865264 ~ 10006532 (+) False gabbr2
XM_026930073.2 mRNA upstream 236320 9804036 ~ 9806104 (+) True LOC113536234
XM_026930023.2 mRNA upstream 241340 9782215 ~ 9801084 (+) True galnt12
XM_026929682.2 mRNA upstream 262713 9761655 ~ 9779711 (+) True poc1bl
XM_026930122.2 mRNA downstream 99762 10147649 ~ 10154191 (+) True ccn4a
XM_026930175.2 mRNA downstream 139806 10187693 ~ 10190316 (+) True wdyhv1
XM_026930176.2 mRNA downstream 139806 10187693 ~ 10190316 (+) False wdyhv1
XM_026929413.2 mRNA downstream 145860 10193747 ~ 10196700 (+) False zgc:91910
XM_026929421.2 mRNA downstream 549529 10597416 ~ 10620173 (+) True angpt2b
TU403677 other upstream 812988 9224640 ~ 9229436 (+) False bet1
TU403493 other upstream 1126580 8912928 ~ 8915844 (+) True sem1
TU403492 other upstream 1126580 8912973 ~ 8915844 (+) False sem1
TU403100 other upstream 1757220 8282960 ~ 8285204 (+) True G340208
TU401977 other upstream 3325278 6711015 ~ 6717146 (+) True G339324
TU404551 other downstream 426596 10474483 ~ 10481970 (+) True G341451
TU405030 other downstream 1244437 11292324 ~ 11294030 (+) False smim12
TU405031 other downstream 1244437 11292324 ~ 11294356 (+) True smim12
XR_004577055.1 other downstream 1762222 11810109 ~ 11815273 (+) False sostdc1b
TU405918 other downstream 2644138 12692025 ~ 12695512 (+) False fabp3

Expression Profile