RNA id: XM_026930036.2


Basic Information

Item Value
RNA id XM_026930036.2
length 4047
RNA type mRNA
GC content 0.47
exon number 10
gene id nfatc1
representative False

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 7592626 ~ 7636971 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGTGAGCTAGTGCGTCACGAAGACCCCGAGCAGCCCGGCACTTCATTTACAACTCCTGAATTAAAACGACGCAACGGgatttctaacacacacacacacacatacacacacacacaaaacctagtTACTAAGGCACATATCTACAGTTTGGATTTTGAATAAGCGCCTTTATAAATTATGCGCACTTTTCCGTGACAGCGTTTTGCATGCCACAGTTTGACAGAACTGACCATTTTTCTGTGAAGTTTTTGGAGTTGTACATAACTTGGACGGTTAACTTTCACCAAAGAGGTCGGAAGCATGAAATCAGCAGATGAAGATGCATACAGCTACACACCGAACATCAGCCTATCCCTTCCACTGAGTAGCCCTTGCCTTCCCACCCAGTACCACAACCTTCAGACCAgtccctccatctctgtctctataAGCCAACCTTCATCATTCTCCCCCAGTGAAGACATGGGCTCGATGGGATACTACCAATCATCTGGCCCCAATGGAGCCCCTGCTCTGGAAAGCCCACGCATCGAGATCACAGCTTATGGTCAGTTCCCTGAAGATGAGGTGGAAGAGAACAATGCACCTGTAGCTAAGCGCGTCAACTCTGTAGTGACTTTAACATTGCCTAGTGGTGAAGGTTACCGTGACCCTAGCTGCCTCAGCCCAGCTAGCAGCGTTTCGTCACGTAGCTGCCACTCGGAGGCTTCATCATATGAGTCAGGCTATTCGTGCAATTATGACAATTCATCACAGAACTCCCCATGGCAGTCACCATGTGTCTCACCCAAAGGTTCCTCTTCATTGCTGTCTGGAACCCTGGGCACCTCACCTCGCCAATCACCTACAGGATCTCCCCGCACCAGTGTGACTGATGAAAGCTGGACAGCACCTCGTGGCTCCCGCTCCAACTCCCCTTGTGGTGGGAAACGGAAATACAGCTTTAACAGCAACGCCTCTCACAAATATCATCCATATTCACCTAACCAGTCACCAGGGCTGTCTCCACAAACCTCACCTCGCCTCAGCATGACTGAAGACGCATGGCTGCCCAACACCAACCAGTACACCAATTCTGCCATTGTGGCAGCCATTAATGCCCTCAGCACTGATGGAATGACTGATATTGGAGAGGGGATTCCACTCAAGACCAGGAAAACCAGCATGGAGCATAACACTTCTGTGAGCCTCAAGATTGAGCCTGGAGGTGAGGAGACAGGCTCTGCAGAGCTCTGTCATGAGGACTACTCCACGTCACGCCTGGCATTTAAGAAGGAGGGCTACACCAGCTTTCTGGATGTACCACATCATCCATATTGGTCTAAACCAAAGCCTTACATCAGCCCATCCTTGCCAGCACTTGACTGGCAGCTGCCCTCCAGTTCTGGGCCATACAGCCTGCAGATCGAGGTTCAGCCCAAATCTCACCATCGTGCTCACTATGAAACAGAAGGAAGCAGAGGGGCCGTGAAGGCACTTGCCGGAGGACATCCAGTTGTTCAGCTTCACGGCTACATGGAGAGCGAGCCTCTGACTCTACAGCTGTTCATCGGGACGGCAGACGACCGTCTCCTGCGGCCACACGCTTTTTACCAGGTCCACCGCATCACAGGCAAGACCGTGTCCACACCCAGCCACGAGATCATGCAGGCCAACACCAAAGTGCTGGAGATTCCACTCCTGCCCGAGAGCAACATGAGGGCCATaattgaCTGTGCTGGGATTCTGAAGCTGCGAAACTCAGACATCGAGCTGCGGAAAGGCGAGACGGATATCGGGAGGAAGAACACACGAGTCAGGATGGTGTTCCGCGTCCATATTAACCAGCCCAATGGCAGGACCGTGTCCCTGCAGGTTGCATCCAACCCCATCGAATGCTcCCAGCGTTCTGCACAGGAGCTGCCTCTGGTGGACAGACAGAGTTTGGACAGCTGTCCTGCAACAGGGGGAGAGCGTATGCTTATCAGTGGTCATAACTTCCAACCTGACTCCAAGGTGGTGTTTGTGGAGAAAGGACAAGATGGTCATCACATATGGGAGATGGAAGCCAAAGTTGAAAAGGACACCTTTAAAACTACAGCTTTGCTTGTGGAGATTCCAACTTACCGAAACCAAAGAATATCCAGCCCTGTTTTGGTGAACTTCTACATATGCAATGGCAAACGGAAGAGGAGCCAATACCAACGATTCACCTACCTACCATTTCCCACCATAAAGACAGAGCCACATGATGACTATGAGCTCCCTCGCCTGTGTGCACAGCAGCACTCCCCTAGCCTTGCCAAGCCGTATTACGGTCTGCAAGCTGTGCCTGCCCTGATGCCTTCAGAAAACAGAGCCTGTGTGACAGCCGCTTATGGCCCTCAGAGACTCCCAGCAAAACCTTCGTCCCTGTcttgctcctcctcctctcccagCACCAGCCCTAAACTGCAGGATCTCTCACCCACACACTTCTCTCCTCAGTGCCTCTCTCCAGGCTCGAACCCTGGGCTTCAGCCAAGTGCCATCCCTCACGTCTCGGCGATCCAGCCCACGCCTGGCCGCTACCAGCAGTCTGTTCTCTACCCATCAGGCAGTGCGTCCTCTTCTCCTGGCTCCCATCCATCTACCCCGAGTTCAGCACCTGAACTCATCTTCACTCCCAGTCACAGTTTGACCCAGTCTCCGGTCACAGGTGAGGCCACAGAGCTGCCTAAAGTTCCAGTGAGGAGTGGGCCATCTCCTCTTTTACAGGACGAAGGAGCACCTCCCACGCTGGCCATCAGCATCAAACAGGAACCACAAGAACTGGATCAAATGTATCTAGATGATGTCAATGAGATCATAAGGAATGACCTGTCCAGCATCTCCGTTCATACCCACGCATAGCGACAATGGAACGTGAATCACACAGAAGAAATTGACATTTGAACCTTTCATACCAGAACAAAAACATGCCTCCGCTTAGCCTGATTGCAATAACAACATCAGCACTGCAAAGTCGATTGTAAAGCTCACAATTGTAAAGCAGTCAGATCTAAGAGACTGACTGAAAAAGCAGCACAGAAAGTGTATGGAATAACAAAATACTACCAAAACAATGCGTGTGAACTGATGGACCAAGCCCTGTGtatggtgtttattttttttcccctctacaTTTCCTCTTGTGCACTCGTGTAGCTCTTTAAATTATTACCCAAGTGCAATTTGTtttccattattattttaatgtctaaatgtttaatgtatGCATATATGCCAATATGCCTTAAAATCAATGGTCATATTATTGTAATTAGACAGTTGTCTGCTATGGTAATGAATCATGTCTGAACAGCCATTCCTTTGCTTACATTGGAATTTTGTCCAGCTGTAATGAAACATAACTGGAACTGcattttttatacattgcaAGAGAATCATATTTATTGTCTCTACCTGAGCTGGAATGAATTGTACACAGGAAAATAAGTAGCGTGTGTTGTGGTagttaaaattataaatgaaatgagCAGTACaaccttacatttaaaaaatttctaaaccaaagtgttttattcaggtTAGGCCGTGATCTGTTTCTGAACTGCCTCTGCACTACCTGTATATTCTCTGTGCCTCTGTGAGCATTTTGTGCCTTATATGCATTGATATGACCACAGATTTCCTTTTCTGCTTAGTTGCATGTCGtcatttttttgctgaaaaattTTATAACCGTTTTATCTAGCTGATGACaggaaaattgttttttttgccacaactacttttgtttgttttctgaaacTCAATATTGTGATAGTATCGATGCCATTGTTTTGTAGGTTATTAGCTAATGTATGCACTTTACTTTGTACTTCTCCTTAATGatattttgaggaaaaattacaacatatgatttgttttctattttttttttcctgatgaaCAGTGAATTTATGAAAGCAACACTCCAAGATACTGTTTTTCTTGCCAGCATCTTGTATCCCAATTAACAATTATTAGTACATTTTTTGCATTAGCAATAGCAAAATATGcacaataaatgcatttaacaaAGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009612 response to mechanical stimulus biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU402435 lncRNA upstream 124980 7449750 ~ 7467646 (+) False G339721
TU402434 lncRNA upstream 137797 7449970 ~ 7454829 (+) True G339721
TU402412 lncRNA upstream 193556 7395074 ~ 7399070 (+) True G339700
TU402368 lncRNA upstream 342211 7247820 ~ 7250415 (+) True G339661
TU402366 lncRNA upstream 359519 7232884 ~ 7233107 (+) True G339659
TU402542 lncRNA downstream 36009 7672980 ~ 7674655 (+) True G339804
XR_003403651.2 lncRNA downstream 127782 7764753 ~ 7772456 (+) True LOC113535942
TU402580 lncRNA downstream 176661 7813632 ~ 7813864 (+) True G339830
TU402787 lncRNA downstream 251733 7888704 ~ 7889014 (+) True G339965
TU402875 lncRNA downstream 361112 7998083 ~ 7998288 (+) True G340047
XM_034298588.1 mRNA upstream 12205 7534040 ~ 7580421 (+) True atp9b
XM_034298589.1 mRNA upstream 12205 7534040 ~ 7580421 (+) False atp9b
XM_026929450.2 mRNA upstream 61125 7522930 ~ 7531501 (+) True sall3b
XM_026930080.2 mRNA upstream 114964 7474707 ~ 7477662 (+) True galr1a
XM_034298549.1 mRNA upstream 314486 7236100 ~ 7278140 (+) True tshz1
XM_026929554.2 mRNA downstream 18734 7655705 ~ 7664305 (+) True fbxl6
XM_026929556.2 mRNA downstream 18734 7655705 ~ 7664305 (+) False fbxl6
XM_026930015.2 mRNA downstream 233906 7870877 ~ 7877775 (+) True trhrb
XM_026929993.2 mRNA downstream 284461 7921432 ~ 7971682 (+) True pkhd1l1.1
XM_026930071.2 mRNA downstream 336585 7973556 ~ 7976616 (+) True gdf6b
TU401977 other upstream 875480 6711015 ~ 6717146 (+) True G339324
TU401948 other upstream 976754 6604657 ~ 6615872 (+) False mturn
TU401842 other upstream 1248755 6339507 ~ 6343871 (+) False LOC113535938
TU400576 other upstream 3237597 4352522 ~ 4355029 (+) True G338163
XR_004577079.1 other upstream 5200251 2358128 ~ 2392375 (+) False LOC113546300
TU403100 other downstream 645989 8282960 ~ 8285204 (+) True G340208
TU403493 other downstream 1275957 8912928 ~ 8915844 (+) True sem1
TU403492 other downstream 1276002 8912973 ~ 8915844 (+) False sem1
TU403677 other downstream 1587669 9224640 ~ 9229436 (+) False bet1
TU404551 other downstream 2837512 10474483 ~ 10481970 (+) True G341451

Expression Profile