RNA id: XM_026930045.2


Basic Information

Item Value
RNA id XM_026930045.2
length 2993
RNA type mRNA
GC content 0.45
exon number 17
gene id clptm1l
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 6653221 ~ 6662882 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTGGCAACACGGAAAAATATTTCAACACGGAAGTTAAAATACGGTTCTGCTTGTAAACCCGGACCAAGAAACGCTTAAAAATTCTCCTGAAGCTTTGTGTTTCTTCTGCATCCCGTTGCTTTCTGCGCGTTATTTTGGTGGGGAAGATACTCCAGAGGAGTGTGAGGAGGATTTGTTAGCATGATATTTGGTTTTTAGCCGGTGATGTCGGAGAGCTGCTTGAAGGATCAGGACTTAAACCCTACGTGTCACAAGCTGCGCGTGCAGCGACACTGGCATGTCGGGTAACACGGGTCGGGTGTTTCACATCATGTGTGTGTAGATCTACAGATCAGTATTGTTAATCCAGTCAGATATTGACATAGCCGAGTAAAAGAGGCAGCATGTTTCAGAAGACCTCTCTGACCACCATCATAGTGGGGGTCTTCATCGTCTACGTGCTGCACACGTGCTGGGTGATGTACGGCATCGTGTACACAAAACCCTGTGAAAAGCCCAGAAGTGACAACTGCATCAGTCCTTATCTTGCAGGAAAACCTCGCCTGCAGATGAGCATCTACACAGCTCTGCGCCCCAACGCTGAAGGaggacacacactcatccacaggGAGGAGGATTTTGATGTGCACACCAGATTTGAGAGGTTAATAAATGTGTCCCTGCCGAAGAAGACACGGAAGAATGGAACGCTATACGGCATGGTGTTTGTCCATCAAGCGGGAATGTCTCCGTGGCAGGACCCACGCCAAGTGCATCTGGTCACGCAGCTCACCACGTACATGCTGCCCAAACCCCCGGAGGTCAGCCTGATCACCGGCCAGGAGCTGCCCCGGAAGCAGGAGCCGAGAACCCCGGGGGGTGATGGAGAGGTGGACCGGCCCGTGTCTCATTGGCGCTCCCGTCTCACACTGAACGTCGTGGCCGAGAACTTCCTGTTCGACCGAGAGGCCATACCGAGTGACGTGCATCGCTATATGAGAGTGTATCAGAGTGGAAAGAAGTTTGTGTACCTCCCTCTGCTGTTTATAGATGAGCTGAGTAACCGAGTGAAAGATTTAGTGGAGATCAACAGCAGCACCACTGAGCTGCCTCTCACTATTTCATACGACACCATCACGCTGGGAAAGCTGCGCTTCTGGATCCACATGCAGGATGCCGTGTACTCGCTGCAGCAGTTTGGCTTTACTGAAAAGGATGCAGATGAAATCAAGGGCATATTTGTGGACACCAATCTCTACTTCCTCGCCCTGACCTTCTTTGTCGCTGCCTTTCATCTCTTATTTGACTTCCTGGCGTTTAAAAATGATATCAGCTTTTGGAAGCAGAAGAAGAGCATGGTGGGAATGTCCAGCAAAGCAGTGCTGTGGAGGTGTTTCAGCACTCTAGTGATTTTCCTCTACCTGCTCGATGAACAGACGAGCCTGCTGGTGCTCATCCCTGCTGGAATAGGATCTCTGATCGAGGTGTGGAAAGTGAAGAAAGCTTTCAAAATCTTCATTTTCTGGAAGGGGCTTACTCCAACTTTCATGTTTGGCAAATCTGATGAATCCGAGAGAAGAACGGAGGAATATGACAGTTTGGCGATGAAATATCTGTCCTACCTGCTGTATCcactgtgtgtgggtggagcCATTTATGCACTTGTATTTGTGAAGTATAAAAGTTGGTACTCCTGGCTGATCAACAGTTTAGTCAATGGAGTATATGCTTTTGGATTCCTCTTCATGCTACCTCAGCTCTTTGTGAACTACAAGttaaaatcGGTGGCTCATCTGCCCTGGAAGGCCTTTATGTACAAGGCGTTCAACACGTTTATTGACGATGTCTTCGCCTTCATAATCACCATGCCAACATCTCATCGGCTGGCCTGCTTCCGGGACGACGCTGTGTTTATCATTTACCTGTATCAGAGATGGCTGTATCCCGTGGACAAGACCAGGGTGAACGAGTACGGCGTGTCTTATGATGAAGAACCAAAACGAAAATCACACAAAGAGTAAAGTGACCACGGCATCTAATCATCCTGCAGGAGACATCCACACGGACACTGAGACAGTGACGAGGACGTGGGCACACGGTTCAGTTAACACAATGGCTGATTGGATCTGCTGTCCCCTTTCGAGTTGGACTTCTGTCTCTTACCTGTGCTTGGTGTTTGTGTCCTGTTCTCCTCATGCTACATGTCGTAATCCTCACGTGAACATGAATATTCAGCTGGGGGAGTGATTACTAAATGAGCAGAATTGATGTTATTGAGTTAACTGGGTCAGCTTAAGCTGTTTAGCTTAAAATATCCTTGATTTGCTCAGGATAGAGCCGAGTTagctcattaacacacatttcattaaatCAGAGCTTATTATTAATGCGTACTGTATCTGCCTGTTATTCCCTGTTATCCTGTCTGTGACTCAAGTGTCACTAATTCAATTTGACCGTTTCTCTAATTATAATGAGGGAAAATAAGCTCAGCTGAAGGCAGAAGTATGATATCTTTCATtaaatagtgtttaaaaaaaaaagtcatgtttgTGCCAAATGAACAGAAGGTTTGATAGTTAGTTGAAAGTCCTGATGAGAGATTGTGATGTTTCTGTGTATTGGGTGAGAATGATCTGTGTGCGAGTTTGTGTACTATATTCCACTGAAGTGTTTAAAGGGCCTTGATTTGTCATTTATTCATGAAGTCCATGCATTGGCTTATGAGGAGGATATTTCTACTTGCTTAGAATTGCAACAATTAGCACTTtttggcatttatttttttaaatctgaaagcTGATTGAAACATCACAACTGAAATGAATGGTAGTAAATCGATGGGATTTTCTCCCCTAATCACCATCAACTCTAATAATTACATTCCTGATGTTATGGTTATCACAATAACGGTGACGCATGAGAAAACACGCATATGCaatgtatgtttttaatattaattttctaATGTTCTTATGCTTCTTcagcaaaataaatcaaatcctCCAGCAAA

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU401951 lncRNA upstream 1396 6648179 ~ 6651826 (+) True G339300
TU401938 lncRNA upstream 7267 6578803 ~ 6645955 (+) True G339290
TU401922 lncRNA upstream 126128 6526395 ~ 6527094 (+) True G339279
XR_004577047.1 lncRNA upstream 155479 6494601 ~ 6497743 (+) True LOC117595844
XR_004577046.1 lncRNA upstream 158976 6493730 ~ 6494246 (+) False LOC117595843
TU402314 lncRNA downstream 287690 6950572 ~ 6951822 (+) True G339616
TU402316 lncRNA downstream 290180 6953062 ~ 6959284 (+) True G339618
TU402366 lncRNA downstream 570002 7232884 ~ 7233107 (+) True G339659
TU402368 lncRNA downstream 584938 7247820 ~ 7250415 (+) True G339661
TU402412 lncRNA downstream 732192 7395074 ~ 7399070 (+) True G339700
XM_026929692.2 mRNA upstream 19029 6621216 ~ 6634193 (+) True znrf2a
XM_026929411.2 mRNA upstream 37199 6604605 ~ 6616023 (+) True mturn
XM_026930162.2 mRNA upstream 81964 6539084 ~ 6571258 (+) True LOC113536295
XM_026930163.2 mRNA upstream 84123 6528408 ~ 6569099 (+) False LOC113536295
XM_026929801.2 mRNA upstream 129248 6479964 ~ 6523974 (+) False snx13
XM_026929412.2 mRNA downstream 1211 6664093 ~ 6666353 (+) True rplp1
XM_034298327.1 mRNA downstream 110437 6773319 ~ 6775535 (+) True LOC113536346
XM_026930099.2 mRNA downstream 332431 6995313 ~ 7008911 (+) True cndp2
XM_034298549.1 mRNA downstream 573218 7236100 ~ 7278140 (+) True tshz1
XM_026930080.2 mRNA downstream 811825 7474707 ~ 7477662 (+) True galr1a
TU401948 other upstream 37350 6604657 ~ 6615872 (+) False mturn
TU401842 other upstream 309351 6339507 ~ 6343871 (+) False LOC113535938
TU400576 other upstream 2298193 4352522 ~ 4355029 (+) True G338163
XR_004577077.1 other upstream 4260750 2358128 ~ 2392472 (+) True LOC113546300
TU401977 other downstream 48133 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 1620078 8282960 ~ 8285204 (+) True G340208
TU403493 other downstream 2250046 8912928 ~ 8915844 (+) True sem1
TU403492 other downstream 2250091 8912973 ~ 8915844 (+) False sem1
TU403677 other downstream 2561758 9224640 ~ 9229436 (+) False bet1

Expression Profile