RNA id: XM_026930162.2


Basic Information

Item Value
RNA id XM_026930162.2
length 5441
RNA type mRNA
GC content 0.48
exon number 28
gene id LOC113536295
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 6528408 ~ 6571258 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAGGTCGGAGCGAATGAGCCGCGTGTGTATCGTCGTcttggaggaggtggaggacgACGAGCCCTCCCCTCTGCATTCCAAAACAGCGCAGGACCACGTTTCCCAGCATTCACCTCCCGAAGCCGACGCTCAGGAAGAGAAGCCTTCGTTGTTGAAAGCCATCTTTAATGTGGATCCAGATGAAGTTCGAGCTCTCATATTCAAAAAGGAAGATGTCAACGTCCagGATAACGAGAAGAGGACTCCCCTCCACGCTGCAGCCTACTTGGGTGACGCCGAGATCATCGAGCTTCTCATTCTGTCAGGAGCGAGAGTAAATGCCAAAGATAATAAGTGGCTGACCCCTCTTCACCGTGCCGTTGCCTCCTGCAGTGAGgaggcaGTTCAGGTGCTGCTGAAACACTCGGCTGATGTGAATGCTCGGGATAAGAACTGGCAGACTCCACTACACGTGGCGGCGTCTAACAAAGCGGTGCGCTGTGCCGAGGCTCTTGTCCCCCAGCTCAGCAACGTAAACGTGTCGGACCGCGCCGGACGCACCGCCCTGCACCACGCTGCCTTCAGCGGACACCTCGAGATGGTGAAGCTTCTGCTGTCCAGAGGAGCCAACATCAATGCGTTTGATAAGAAGGACAGGAGAGCTATACACTGGGCTGCGTATATGGGTCATATGGAGGTGGTGCGCTTGTTGGTGTCTCATGGTGCTGAGGTGGTGTGTAAGGATAAGAAGGGCTACACGCCGCTCCACGCTGCAGCGTCTAGTGGGATGATCGGTGTGGTGAAATACCTGCTGGATCTGGGCGTCGAGATCAATGAACCGAATGCGTACGGAAACACTCCACTGCACGTGGCGTGCTACAACGGTCAGGACGTGGTAGTGAACGAGTTAATTGAATCAGGTGCTAACGTCAACCAGGTGAACGAGAAGGGCTTTGCACCGCTGCACTTTACCGCTGCCTCTCGCCAGGGGGCGCTGTGCCTGGAACTGCTAGTGGGTAACGGAGCAGACGTCAACATCAAGAGTAAAGATGGAAAGACTCCCCTTCACATGGCCGCCATTCACGGCAGGTTCTCCAGATCTCAGGCTGTCATTCAGAGCGGAGCTGAGATTGACTCTGAAGATAAGAATGGAAACTCACCTCTGCACATAGCAGCTCGATACGGCCACGAGCTCCTCATCAACACCCTCATCAGCAACGGCGCTGACGTGGCCAAGCGGGGCATCCATGGCATGTTTCCTCTTCACCTTGCTGCACTAAGTGGCTTCTCTGACTGCTGCAGGAAGCTTCTCTCCTCTGGGTTTGACATTGACGCACCTGATGACTTTGGCAGAACGTGTTTACATGCGGCTGCAGCAGGAGGAAACCTCGACTGTTTAAACCTGCTGCTCAACACTGGAGCTGACTTCAACAGGAAGGACAGATTCGGAAGGACGCCACTGCACTATGCGGCCGCTAACTGTAATTATCAGTGCCTGTTTGCACTAGTGGGCTCAGGAGCCAGTGTGAACGACACAGACCTGAGAGGCTGCAGCCCTATGCACTACGCTGCTGCCTCAGACACCGACGCCAAgtGCTTGGAGTATTTATTGCGTAACGATGCCAATCCAGGGATCAGAGACAAACAGGGCTATAACGCAGTGCACTACGCCTCAGCCTACGGTCACCGCCTCTGCCTCGAACTGATTGCCAGTGAAACACCGCTGGATGTGCTTATGGAGACATCTGGGACCGATATCCTGAATGACACCGATGGCCAGGCTCCCATCAGCCCTTTGCACTTAGCAGCATACCACGGCCACCACCAGGCTCTGGAGGTGCTGGTTCAGTCCCTGTTGGACCTGGATGTGCGGACGGTGCAGGGACACACACCGCTGGACCTGGCTGCCTTTAAAGGccatgtggagtgtgtggatgtgCTCATCAACCAGGGAGCCTCCATCCTGCTTAaggactacacacacaaaagaacacCCATTCACGCTGCAGCCATGAACGGTCACTCAGAATGTCTCCGCCTCCTCATCAGCAATGCTGGCCCACCCTCAGCCGTCGATGTCCACGATGGGAATGGACAAACTCCTCTGATGCTGGCGGTGCTGAATGGACACACAGAATGTGTCTACTTCCTGATCAGCAAAGGAGCCAATGTGGGAGCCAGAGACAAGTGGGGCAGGACGGCTCTTCACCGCGGGgcGGTGACAGGGCATGAGACGTGTGTGGAGGCGCTGTTGCAGCATggggccagtgtgtgtgtacgggACAGTAGAGGGCGTACAGCCATGCATCTGGCAGCGGCGTGCGGTCACGTTGGGGTGTTGGGGTCTCTGCTGCAGGCCGCACACTCCCAAAACACGGTGCCGGTCATCATGGACAGCTGTGGATACACCCCACTCCACTGGGCCTGCTACAACGgtcaTGATACGTGTGTTGAGGCACTGTTAGAGCAGGAGGCGTTCCACAGGATGGAGGGCAACTCCTTCAGTCCACTTCACTGTGCTGTAATCAGTGATAATGAAGGTTCAGCTGAGCTGCTGATTGACACACTGGGTCCTGCCATTGTTAACGCTACAGACTCCAAATCCAGGACGCCTCTACATGCTGCAGCCTACACAGACCATGTGGAATGTCTCCAGCTGCTGCTCGGTCACAACGCCCAGGTGAACGCCATCGACGCTCTGGGCAAAACACCCCTCATGATGGCGGCTGAGAACGGCCAGACTAACGCCGTGGAGGTGCTTGTGAGTAAAGCGAAGGCAGAACTCACACTCCAGGATGCAAACAAGAACACAGCCCTACATTTAGCCTGCAGCAAGGGGCATGAAACCAGTGCCTTGTTAATTCTGGAGAAGGTCACGGACAGGAACCTAATCAACGCCACAAACGCAGCTCTACAGACGCCGCTGCATGTCGCTGCGCGTAATGGACTTGCGGTTGTAGTGCAGGAGCTGCTGGGTAAAGGAGCCAGTGTCCTGGCTGTGGATGAAAACGGTTATACTCCAGCTTTAGCGTGTGCACCGAACAAAGACGTGGCCGACTGCCTGGCGCTGATCCTGGCCACCATGATGCCCGTGTCCCCTGCCAGTACCGGCACCGTGCCAGGCCTAAACTTCAGTGCCATAAATCACTACTGTAGCCCTTCCAAagctgtgacctttgaccctttACCCAGCCTGCGCTCCGGGCATCCATCTTACTGCAGCTTCAACAGCCTGGGACGTGAAGATGGCCTCGTTATTCATGATGAAGAATTTAACGACTCGGATTCAGAGACTTACTGAGGACTTCGGTTCATCTCACTGCTGAGGATCGTTCAGTACCCGAGTGCCTGGAGATCGCTGAAGACGCTAACGCTATGTTGCTGAATCACAGTAAAGTGGATTTAGTGCTGTGTCCTTTCTATGGAATGAGAAATGTGCCACTACACTCTAAATTTAAGATacacaaatctgattttttttttgtgtgtgtgtgtagctgaagTACAGGAAATTGAAGTTGTATTCCATGCTTTGAATTTGTCTGCAAggtttcaatttcaattttataataatcagGTACAGAAAATTTAGGGGCACAATCTATTTCAAATTCAGAGTCGAATTTACTAAATTTTCTAAACACTAGTCTGTAGAGTTGCCATtagaaatttgaatttaattgcAAAAATCTGAAACTGAATTTCATGTTTAAGGGTGAACGAGTGACCATGTCATTCTAAATGAAGTGCGCATATAATCAATTTCTAAAAATTGTTCCGTATTTCggtgtgaaaaatgtttatcCTTGCCTTTAATCCAGTAACAATATAACAAAGTAAATGTGCTGACATTTGAAATAAGATTCATTTGGACAGGTTGGCGATAGTATTGATGATGGTGTGTCATTTAGCTGGTTATAGTGAGATAGCCAGGTTTTCTAGAGGTTCAGTGTTTGCTTTTACCTCCAAGATGTTATGGATTAGTCATCATTTAGATCATTTAGAATGTCAAATATTAAGTTGTAAGTTGTTCAGTTTCAGATTTTAGATCTTTTGCAAGCCATgaaattcagtttcagtttctgGTGGTATGATACAAATtcaaattaataacatttaatgtatttaaattgaaattttcTGACATGATCCTAACTCCACACCACCACATCAGTGGCTCAAACGGTGGCAATCGAATCTGTGCTCGTTTGCCTTTCCTAAGTCTCCagatttttgaaaatttaaatctaaatttgaAATGGATTATGCCACCAAAACCTGAATGTGAATTTTCCACACctgattattataaaattaaaatcttgcATGCAAATTCAAGCCACAGAATACAATTACAGAAACTACAAAAATTTCActtacaaattcaaataaaaattcagattaaaaaaaaagaaaaaaagaattcagaTTGTACTGGCACGTTTCTCATTCCATACTTTTCAAGCTATAGCTCTTCTGGGAATAATGGAGCGTACCATTTTTGTGGGATGTCACTCCGGGTTCCCTCTCTTACACGGCTCAGGAGCGTTTAGAGACATGAGagcaggagagaaaagaaaatcaggACGTGGTTGATCATCCACACTGCAGCATGATCTGGATTGTGTTTTCACACTCACCATGGGTTTGGTTCTTTATCTCACCGTTCTTTCAAAATACTTCTGTTGATCCTGATACATTTAATTTCCCATGAAACAGGAACCATAACCTCAAACACAACAATAATGACTACTGTGGAAGTTTCTCGACACATCGGCTCTGGCAGTAAGAGAAGAAATCATGAACTTGTAACCAAGGGACCAAGTTGCCCTTTTTAAAGCATGAtttagtatttttgtttgttgtttgtttgtttttttagctggggttaatttattattaactaaGATTAACCAAGATTTGGACAAAACAGACTGCTGTGAATGTTAAGTGCAAACCTCCGGTCCGTGTTGCTGCAGAGTAACTGATTAACGGAAGACGGACGGATTTCTATGAACCCTGGAGTATCATTAAAAGGGCATTCTGATGCATTTCTTACCCACGAGTTCGAGACCAGCTATCGAGGTGACAGGGTTTATACACACTCAGTGCTGGTTTTTGGTGAATTGCAACATTTGTTATAGAGCAAAGACGTGTGTGTATACCTGCGTTTccgtgtgtgcttgtgtgtgtgagtgattgtatgtgttttaaaaaaaatgttaccttTTATAAAGGGTAAGGACTGGCCACTTGGTGCATTGCTCAAATGATTACTAATAAATCTTGAATATTTTTGTCACACACCACAATAAGGTCAGCTCTATGATAAGGactgatttgattatttaaatgtagGAGTGCTGAAACCCATTTTACACAGAACATGTGATTGCTGTTAGCCGGTTAAATGCAGTCTCTGAAGTTGCTCACAATAAACCGTGTATTTACTCAGAATGA

Function

GO: NA

KEGG:

id description
K15502 ANKRD28; serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU401922 lncRNA upstream 11990 6526395 ~ 6527094 (+) True G339279
XR_004577047.1 lncRNA upstream 41341 6494601 ~ 6497743 (+) True LOC117595844
XR_004577045.1 lncRNA upstream 44838 6493637 ~ 6494246 (+) True LOC117595843
TU401938 lncRNA downstream 7545 6578803 ~ 6645955 (+) True G339290
TU401951 lncRNA downstream 76921 6648179 ~ 6651826 (+) True G339300
TU402314 lncRNA downstream 379314 6950572 ~ 6951822 (+) True G339616
TU402316 lncRNA downstream 381804 6953062 ~ 6959284 (+) True G339618
TU402366 lncRNA downstream 661626 7232884 ~ 7233107 (+) True G339659
XM_026929800.2 mRNA upstream 14958 6477323 ~ 6524126 (+) True snx13
XM_026929801.2 mRNA upstream 15110 6479964 ~ 6523974 (+) False snx13
XM_026929961.2 mRNA upstream 153404 6384201 ~ 6385680 (+) True twist1a
XM_026930087.2 mRNA upstream 157747 6380160 ~ 6381337 (+) True LOC113536247
XM_026929374.2 mRNA upstream 188355 6345471 ~ 6350729 (+) True polr1f
XM_026929411.2 mRNA downstream 33347 6604605 ~ 6616023 (+) True mturn
XM_026929692.2 mRNA downstream 49958 6621216 ~ 6634193 (+) True znrf2a
XM_026930046.2 mRNA downstream 81963 6653221 ~ 6662882 (+) False clptm1l
XM_026930047.2 mRNA downstream 81963 6653221 ~ 6662882 (+) False clptm1l
XM_026930045.2 mRNA downstream 81964 6653222 ~ 6662882 (+) True clptm1l
TU401842 other upstream 195213 6339507 ~ 6343871 (+) False LOC113535938
TU400576 other upstream 2184055 4352522 ~ 4355029 (+) True G338163
XR_004577078.1 other upstream 4146606 2358128 ~ 2392478 (+) False LOC113546300
TU401948 other downstream 33399 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 139757 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 1711702 8282960 ~ 8285204 (+) True G340208
TU403493 other downstream 2341670 8912928 ~ 8915844 (+) True sem1
TU403492 other downstream 2341715 8912973 ~ 8915844 (+) False sem1

Expression Profile