RNA id: XM_026930176.2


Basic Information

Item Value
RNA id XM_026930176.2
length 1420
RNA type mRNA
GC content 0.37
exon number 6
gene id wdyhv1
representative False

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 10187693 ~ 10190316 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCAAAAAATGTAACACGCTACTACACTAAAGTAAACGAAAAGAGAAGGAAGTTTAATATTTTCAGCGCTTGAAAGTTATGGCATGATAACGGTTTATGGAAAAGAATTGAAGTTAATTGAAGTTGATTTAATTTAGCTCTACGCAGACATGCATGAGGAAGGTGTTTGTGCAGAATACACAGCTATCACTCCACTAAGAGAGGAGTGTGTTTACACGAGCTGTTACTGTGAAGAGAACGTGTGGAAATTGTGTGAATGTATCCAGGCTCAGGCGGTGTGTCCATTGGACGAAGTGCATGTAGTCTTCATATCGAATGAAAATAAAACGATCCCTATTTGGAAACAGAAATCCAGCAGAGGGGGTGAACCTGTGATATGGGATTACCATGTTGTGTTACTGCACTTGAACCCACAAGCACAGAGTTTTGTGTATGATCTGGACACCACTCTTCCCTTCCCGTGTCCTTTTGACGTGTATTCAAGGGAAGCATTTCGATCTGATGAGCTGCTGAAACAGAAATTTCGAAGGAAAATGCGAGTCATTCCGGCTGTCACCTACTTAAAGAAGTTTGCTTCAGATAGATCTCACATGATGCATCCTAACGGGACATGGCGTATGCCCCCACCACCATATCCTTGCATAGAAACTACAGAATCCAAAATGAACCTGGATGACTTTATCAGCATGGACCCGAATGTGGGCTTAGGAAAAGTTTATAAACTTCCTGAATTTGTGCAACACTTTGGAGCTAAGTGATGAATTTTGGAAGCAGCAAATAAACTGTATCAAAGTCATGCTGAAATGTAGAAGACAAGTTGCGATTGTCGACGTTTGGTATAATAATGAACCAACCAAATCAGTGACTGATGCATGAACATGACTGATTCAGCCTCTACAGTGTCTCAAAGCCTAAAGCTCACAGCACAGTGTGAATAAGTTGTTTATTGTATGCAAAttgtttcattaaattaaagaagaaaaacccTGAAGCCACTGGAGacttttgctttattttcagattgTAAAAATTGTTCTTGTATTGTAATTTTTCCTGTAATCATTAatactgatttatatttataattttgagTAAAATTGCTCTTTATTTTTAagttgtgtatgagtgtgttgcTTTGAAAAAGCACTCTAATGTTAAACAATCTACTGTAGCATGGCCTATTGGTGAATAACTTGCTGTATGCagatgtttttgttattgttagcCATTATAGAGCCATTTATCTTCACAATTGCTGTAATTGTTttgcaaatgtgtttttgcttcTTTAAGTAAAGCAGCAAAACAGAGTGAGTCATAACATTTATTGATAGTCTGTGTTCTTGTACAAAGAAGAGGAGTAGAtatacaagtaataaaaatgctgttattCAGAATTATAGAGGTTTTTTgaacagtg

Function

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0070773 protein-N-terminal glutamine amidohydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU404103 lncRNA upstream 456724 9728928 ~ 9730969 (+) True G341038
TU404020 lncRNA upstream 518465 9627788 ~ 9669228 (+) True G340967
TU403973 lncRNA upstream 622167 9557697 ~ 9565526 (+) False LOC113536134
XR_003403660.2 lncRNA upstream 627320 9557738 ~ 9560373 (+) True LOC113536134
TU403683 lncRNA upstream 940645 9246479 ~ 9247048 (+) True G340687
TU404499 lncRNA downstream 3460 10193776 ~ 10197002 (+) True zgc:91910
TU404568 lncRNA downstream 207894 10398210 ~ 10398409 (+) True G341468
TU404570 lncRNA downstream 208637 10398953 ~ 10399867 (+) True G341469
TU404547 lncRNA downstream 247088 10437404 ~ 10458143 (+) True G341449
XR_004577048.1 lncRNA downstream 256012 10446328 ~ 10447955 (+) True LOC117595845
XM_026930122.2 mRNA upstream 33502 10147649 ~ 10154191 (+) True ccn4a
XM_026930031.2 mRNA upstream 139806 10042424 ~ 10047887 (+) True abitram
XM_026929439.2 mRNA upstream 181161 9822703 ~ 10006532 (+) True gabbr2
XM_034298365.1 mRNA upstream 181161 9865264 ~ 10006532 (+) False gabbr2
XM_026930073.2 mRNA upstream 381589 9804036 ~ 9806104 (+) True LOC113536234
XM_026929413.2 mRNA downstream 3431 10193747 ~ 10196700 (+) False zgc:91910
XM_026929421.2 mRNA downstream 407100 10597416 ~ 10620173 (+) True angpt2b
XM_026930135.2 mRNA downstream 866789 11057105 ~ 11078437 (+) True LOC113536281
XM_034298839.1 mRNA downstream 1085510 11275826 ~ 11283228 (+) True cx30.9
XM_026930215.2 mRNA downstream 1090230 11280546 ~ 11283228 (+) False cx30.9
TU403677 other upstream 958257 9224640 ~ 9229436 (+) False bet1
TU403493 other upstream 1271849 8912928 ~ 8915844 (+) True sem1
TU403492 other upstream 1271849 8912973 ~ 8915844 (+) False sem1
TU403100 other upstream 1902489 8282960 ~ 8285204 (+) True G340208
TU401977 other upstream 3470547 6711015 ~ 6717146 (+) True G339324
TU404551 other downstream 284167 10474483 ~ 10481970 (+) True G341451
TU405030 other downstream 1102008 11292324 ~ 11294030 (+) False smim12
TU405031 other downstream 1102008 11292324 ~ 11294356 (+) True smim12
XR_004577055.1 other downstream 1619793 11810109 ~ 11815273 (+) False sostdc1b
TU405918 other downstream 2501709 12692025 ~ 12695512 (+) False fabp3

Expression Profile