RNA id: XM_026930202.2


Basic Information

Item Value
RNA id XM_026930202.2
length 2701
RNA type mRNA
GC content 0.40
exon number 7
gene id laptm4b
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 8082902 ~ 8094663 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCCCCGCTGTCCGGTCACGTGACCAGGGGATGAGCCGAATTAATGCTGaggcacagagccctgaacacACGACGCACTGGATGCTTACACTCTGAATACCGCACTGCAAACCCTCGCCATTACATCTCTGAGAGGCCTACATGAAATAACTGCACCTCGTTCTGAAGCAGGAAGATGATTTCGCCGTGGGACAGATGGTACACGACGAGCTGCTGCCTTTGTTGTCATGTACGGACGGGAACCATTATCCTCGGCGTCTGGTACATGCTCATCAATGCCGTGGTGCTGTTAATCCTGCTGTCTGCTCTAAACGACCCAGTGCAGTATCACTACCACCTCACCAGTGCCGAACTTGGCACAGACTTGGATGTCATGGATGACGCAAACATGTGCATCGCTGCTGCAATTTCCCTGCTGATGATATTGATTTGTGGGATGGCGACCTATGGTGCTTATAAGCAACATGCTGCTTGGATTATTCCATTTTTCTGCTACCAAATCTTTGATTTTGCCCTTAACACCCTGGTAGCAATTAGTGTCATGGTTTACCCGAACACCATTCAGGATTACCTTGAGCAGCTGCCTGGGACCTTTCCATACAAAGACGACTTAATGTCCACCAACAATATATGCCTAGTGTTCGCAGTACTTGTCTTCATCGGCTGTATTCTGGCCTTTAAGGCTTACCTGATTGCCTGTGTGTGGAACTGCTACAGATACGTTAGTGGAAGAGGCACCACAGAGGTCTTGGTTTATGTCACCACTAATGATACAACAGTGCTGCTCCCATCCTATGAAGAGGTTGTTGCAATTCCGCCGAAGGAGCCACCCCCTGAGTAAATCTCAACATGAGACggatgttttctctctctgactcctTCAGTCTTCTCCATATATATCCTCCAAAGAAAAGCTTTTTCTGTCAGTGTTTCCTATTTCCCCACTCGAGCCTTCCACTTTTTACTCTGTGACATGTCTATCCTTTGCTCCCTGAAGGCAGTAGTGTGACTTGCTTTTCCCTCTGCGAGTCTTCACAGCCTTCCTGGCAACAGTGCTGCGTGTCAGCTCCAATTTGGATTTGCACTTTCAGCGTTCAGTCGTTATGCACAGCACTGACCTCcccttttttaaatactgtgaaCTTCTCAGCACTGCTGTTGGCTACTGAAATACCTGACATATAAATGTGGCAGGTGTAATAAACATGCGAGTTACTTAAGAGCACTTTCCGACTGGCAGTTTTCCCAGGAACCTGATGAATGTGGCAGCCagggtaatatatatatacaaatacatcTTTATATTAACAATGAATTGTGAGAATTGTGAGAAGATCCTGAATGACCAGTCTACAACATCTTAAACAGGTTTATACCAACAGTAGCCAATATTTAATGCAATTTCAAAGttactaataaaaatacatttcagataATTTCCTAGTGATGGGTTAACAGAAACATTTTGCAAGTATTCCAAATTTGAGATGagatatagtgtatatagttgcagtttaatgaaaaacaagGATACAGGTTTAAATGTGAAAGTAATCTAGTCATTTTCACAACATTatcttcattatttttcatatagAATATCTGAATATGGCTATTTCACACACTGCCCTGTAttgctgattttatttaaaaccataCATCCAGTTGCTACCGGTCCTATGCAGAGTCGCCACATTGTTTTTGCACATAAGTCTTAATAATTCATGTTGTACGTTCTCTGATAGATAATGAAGGAAAGTTATAGACTGTATGTAGCACAGTAATGTAGTACTGCTATTACACAGCCGTGTATGGGTCTGAATATAGGTGACATGAACAATCTCCTGAAGTCTTCCCTAGCTTAATTCTGCTTAAGATTTGAAAATGAATTTGTTAATGTTATATAAAGATCTATGCAACAACTATGCAGAATTATGTTAAATTGTACTGCGTTTCAACACCGAGCACTTTAGTATCGATGCCTTAAATGAAGCCTGCAGACTCTCGGTCACTGCTCTGGTTATATTATTTCCCCTGAATTTGCATTTTCCATTTACCGGTTATTTATAGTGTTCACTTGTCTAGCTGATTTCTGTAATTATTCATTGGGAGCTGTCCTCCTTGCTTTATGTAGCTCTAGGGTGCAATGGAAGGAAATTTGCTAATTAGTAAATAACAAAAAGGGGGGACAAAAATCTTACAAAACTACCAACAATCTATAGATAAACCAATGGTTTTTACATTGTTGCTACATTttatacactgaatacattgATCACATCTCTCAGAGCTCTTAAACTATATAAACCAGTGACAGAATGTCTGTCTGCTCCAGTTAAGCATTCCATACAAAAGAGCTGTGGGTTGAAACGTAGTAAAATATCGCTATGAACAACCTGCAGTAACCACGTTTGCCGTTTCCTTGTCATGAACCAGATCGTTATTCAGATTCAATCATTTTGTCCTGTGATGTGTTTAGGCTCCTAAAATCTAACATTATAACCTGATCCAGTTAATCACCTTAAATTTCTGAGTGTGTAATATGTTTGCTTAGAAAAAAATAGTCAGTTCTGAAATTTCTTACTGGTTTTTACTGTTGGTTGTATGTTTTGTCTGTAATTGAGATGATTCGAACTTGATGTTCTATCAGCTGCAATATTTGTACTGAACAgttcttaaaattaaaagaatCTCATGTTGA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K12387 LAPTM; lysosomal-associated transmembrane protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU402875 lncRNA upstream 84614 7998083 ~ 7998288 (+) True G340047
TU402787 lncRNA upstream 193888 7888704 ~ 7889014 (+) True G339965
TU402580 lncRNA upstream 269038 7813632 ~ 7813864 (+) True G339830
XR_003403651.2 lncRNA upstream 310446 7764753 ~ 7772456 (+) True LOC113535942
TU402542 lncRNA upstream 408247 7672980 ~ 7674655 (+) True G339804
TU402884 lncRNA downstream 2506 8097169 ~ 8100677 (+) False G340056
TU402885 lncRNA downstream 2506 8097169 ~ 8100677 (+) False G340056
TU402887 lncRNA downstream 2506 8097169 ~ 8100677 (+) True G340056
TU402890 lncRNA downstream 2506 8097169 ~ 8100677 (+) False G340056
TU403010 lncRNA downstream 139204 8233867 ~ 8237952 (+) True G340146
XM_026929762.2 mRNA upstream 2049 8070868 ~ 8080853 (+) False mtdha
XM_026929761.2 mRNA upstream 2049 8070868 ~ 8080853 (+) False mtdha
XM_034298595.1 mRNA upstream 2049 8070868 ~ 8080853 (+) False mtdha
XM_026929760.2 mRNA upstream 2049 8070869 ~ 8080853 (+) True mtdha
XM_026929763.2 mRNA upstream 2049 8070870 ~ 8080853 (+) False mtdha
XM_034298329.1 mRNA downstream 7183 8101846 ~ 8105968 (+) False si:dkey-284p5.3
XM_034298330.1 mRNA downstream 7675 8102338 ~ 8105968 (+) True si:dkey-284p5.3
XM_034298328.1 mRNA downstream 7681 8102344 ~ 8105968 (+) False si:dkey-284p5.3
XM_026929663.2 mRNA downstream 27366 8122029 ~ 8136818 (+) True nt5c1aa
XM_034298596.1 mRNA downstream 73554 8168217 ~ 8200794 (+) False hpca
TU401977 other upstream 1365756 6711015 ~ 6717146 (+) True G339324
TU401948 other upstream 1467030 6604657 ~ 6615872 (+) False mturn
TU401842 other upstream 1739031 6339507 ~ 6343871 (+) False LOC113535938
TU400576 other upstream 3727873 4352522 ~ 4355029 (+) True G338163
XR_004577079.1 other upstream 5690527 2358128 ~ 2392375 (+) False LOC113546300
TU403100 other downstream 188297 8282960 ~ 8285204 (+) True G340208
TU403493 other downstream 818265 8912928 ~ 8915844 (+) True sem1
TU403492 other downstream 818310 8912973 ~ 8915844 (+) False sem1
TU403677 other downstream 1129977 9224640 ~ 9229436 (+) False bet1
TU404551 other downstream 2379820 10474483 ~ 10481970 (+) True G341451

Expression Profile