RNA id: XM_026930214.2


Basic Information

Item Value
RNA id XM_026930214.2
length 1638
RNA type mRNA
GC content 0.46
exon number 5
gene id pef1
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 11284533 ~ 11291582 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACACTAAGATGGACCAATCAGCCTCGAGAGgcgggacaaaaaaaaaaatcaaacgtTCATACTCGACACGAAGTTGCTTCATACAGCGAAATGAGTTTTTACGGGCAGGGCTATCCAGGAGCAGGGGGTAACATTCCCCGACAGCATCCTTCTCCAGGTAACCCCTATGGAGGTGGGGCACCCCCAGGTGGTCCTGTAGGAGGGCCATATGGGGGTCCGGCTCCTCCCGGGGGTCCGCAGTATGGTGGTGCACCAGGAAGACAGTATGGAGGACCTTATGGTGGTTATGGTGGAGGTCCTGGGGCCCCTGGAGCTCCTTATGGAGGTGGTCAAGCTCCAGGAGCCCCTTACGGAGGATATGGGCAGCCTCAGGGTGGACCATATGGCCAGCATATGCCTGGAGGTAACATTCCACCAGGGGTTAACCCCGAGGCGTATCAGTGGTTTCAGAGTGTTGACGCCGATCACAGTGGCTACATCAGCCTGAAGGAGCTAAAGCAGGCCCTGCTCAACTCCAACAACTCAGCATTCAATGATGAAACCTGCCTGATGATGATCAATATGTTCGACAAGACCAAAACTGGCCGCATTGACGTATTCGGCTTCTCGGCTCTCTGGGTGTTTTTACAGCAGTGGCGGGCAATTTTCTACCAGTTTGACCGTGACCGCTCAGGTTCCATCAACAGCAATGAGCTGCATCAAGCACTCTCTCAGCTGGGTTATAACCTGAGCCCGCAGTTCATTCAGAACCTGGTGAACCGTTACTGTGTCCGTGGCATGAGTAATGCCCTCCAGCTCGACTCCTTCATCCAAGTGTGCACTCAACTGCAAAGCATGACCCAGGCCTTCCGTGAGAAGGACACCGGCATGACCGGCAACGTACGCATGAGCTATGAGGACTTTCTCGCCTGCACCATCACACGGCTCATGTGAAGATTTACATTCCATCAGATGGCAGTTTGATCCCTTCAGTGCCAAAGACCTCCGGGCACTCCGGATGTTCCATCATAACTGTGCCTTTCACTGCAGTTTACCTCCCGCACCCTAAATGCCCTGAATACATGCACTCCTACTGCTTACTTTGCTTGTTATTTGTTTCaatttcaaagtgcaagttGAAAGAACAGCTAACAGGAAGTGTGCCATACCTGTGTATGTAATgcctaaaaaaattttttaggaGAACAGCTCACTCAGGGAGTGAAGTTGCATTATTATATCTGCTGCCAATCATGTATTTTGTGgggctttattttattaactatattattttatattgcaaCTGCATTCAGCTGAAACTCTTTAGTTTCTATATTACTGATAAAGTCATTACATTAATTCAACCAAATAACTGATATGGTGCAGTCTAAGATTGATGTATTGTAATAGATTGAAGGCTTGGATCCAGAGGGGTTGTAAGTAACATTTGACAAagatttgcatttaatttattgaaGACTGGCtaatataaatagtaatattTGTTTTAGCACTAGATCCCATTAAGAGCCCATTAATCCATTTGAAAATGGCAAAACTTTGTAATGTAACACTCAATATCTTTTACAGCATTGTGCCAGAAATTATGTAGATTAAAGCTTTTTTTGCCCCAGATTAAAGCAAATGCTGATTGGTTAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23905 PEF1; peflin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU404547 lncRNA upstream 826390 10437404 ~ 10458143 (+) True G341449
TU404546 lncRNA upstream 829741 10449436 ~ 10454792 (+) True LOC113536353
XR_003403676.2 lncRNA upstream 830736 10449709 ~ 10453797 (+) False LOC113536353
TU404543 lncRNA upstream 832971 10450465 ~ 10451562 (+) True G341445
XR_004577048.1 lncRNA upstream 836578 10446328 ~ 10447955 (+) True LOC117595845
TU405048 lncRNA downstream 27173 11318755 ~ 11319077 (+) True G341894
TU405046 lncRNA downstream 42737 11334319 ~ 11336268 (+) False dlgap3
TU405043 lncRNA downstream 93454 11385036 ~ 11473979 (+) False G341890
TU405042 lncRNA downstream 167505 11459087 ~ 11473979 (+) True G341890
TU405227 lncRNA downstream 292060 11583642 ~ 11583855 (+) True G342067
XM_034298839.1 mRNA upstream 1305 11275826 ~ 11283228 (+) True cx30.9
XM_026930215.2 mRNA upstream 1305 11280546 ~ 11283228 (+) False cx30.9
XM_026930135.2 mRNA upstream 206096 11057105 ~ 11078437 (+) True LOC113536281
XM_026929421.2 mRNA upstream 664360 10597416 ~ 10620173 (+) True angpt2b
XM_026929413.2 mRNA upstream 1087833 10193747 ~ 10196700 (+) False zgc:91910
XM_026929427.2 mRNA downstream 709 11292291 ~ 11294059 (+) False smim12
XM_026929428.2 mRNA downstream 724 11292306 ~ 11294059 (+) False smim12
XM_034298335.1 mRNA downstream 872 11292454 ~ 11294059 (+) False smim12
XM_026930020.2 mRNA downstream 22948 11314530 ~ 11467459 (+) False dlgap3
XM_034298527.1 mRNA downstream 42746 11334328 ~ 11473323 (+) False dlgap3
TU404551 other upstream 802563 10474483 ~ 10481970 (+) True G341451
TU403677 other upstream 2055097 9224640 ~ 9229436 (+) False bet1
TU403493 other upstream 2368689 8912928 ~ 8915844 (+) True sem1
TU403492 other upstream 2368689 8912973 ~ 8915844 (+) False sem1
TU403100 other upstream 2999329 8282960 ~ 8285204 (+) True G340208
TU405030 other downstream 742 11292324 ~ 11294030 (+) False smim12
TU405031 other downstream 742 11292324 ~ 11294356 (+) True smim12
XR_004577055.1 other downstream 518527 11810109 ~ 11815273 (+) False sostdc1b
TU405918 other downstream 1400443 12692025 ~ 12695512 (+) False fabp3
XR_003403671.2 other downstream 1494255 12785837 ~ 12792473 (+) True LOC113536228

Expression Profile