RNA id: XM_026945933.2


Basic Information

Item Value
RNA id XM_026945933.2
length 5222
RNA type mRNA
GC content 0.46
exon number 9
gene id epn3a
representative False

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 4330168 ~ 4352491 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCCACACCCTCACTTCACTTTCCcctgcttttccaggctttagGGCTCTAGGTGTTTAGGTTCGTCgggttttttcttcacttcaCACCCCAAAAAAATCAGAGCACATCCTGAAACTAGAAACCCGCCTAGTCCTGCCTGCACTCAGTGTgcgttaggtgtgtgtgttaggtgtgtgtgtgtgtgtgtgtgtgtgttgcggaAAGTCTCAGCAGGAATAACAGCGCAGGAGAGATGTGGAAAGGTTGCGCACTTCTGGCCAGGATCCTGAAGTTGGGACGGATGTGACGAGCCATGATGAGAGGAGGTCCATAGCCTAGTGGACTCTGATGCTGAATTTGGGCAACGCGATCCTCTTCAGTCCTCAAAGCTACACTGAATCATCTCTGTACCCTGAGCTCTCTTAAAGAGGAGACCAGAGAGGCAATATTGTCCCATTAACATCGATTAAAACACCATGACGACGTCGTCCTTGCGCCGCTCCGTGAAGAACATCGTAAACAACTACACGGAGGCGGAGATCAAAGTGCGAGAAGCGACCTCCAATGACCCATGGGGTCCTTCGGGTTCACTCATGATGGAGATCGCCGAGCTGACGTTCAACGTGGTGGCCTTCGCCGAGATCATGGGTATAATCTGGAAGCGCATGAATGACCACGGCAAGAACTGGCGTCACGTCTACAAGGCGCTGACGCTGCTGGATTATCTGGTGAAGACTGGCTCAGAGCGTGTGGCTCAGCAATGCAAGGAGAACATCCACTCAATCCAGACACTCCGGGACTTCCAGTACATAGACCGTGATGGCCAGGACCAGGGCGTGAACGTGCGCGAGAAGGCCAAGCAGCTCGTTTCTTTACTCCAAGACAAAGAGAAACTGAAGCAAGAGAGGGGCCAGGCTCAGACGACTCGTGAGCGCACAGCCCATACCGGCAGTGTCAAGGCATACGGCTCCATGCCTCCACCCTACTCGGGAAGCCGCACCAGCCAGCCCACCATGGCAGCCGTCTATGGGGACGCGTACAGCCGCTCTCGAGGCTCACCCTCCTCCTACAACTTGTCCACTTCACCCCCTCATCTGGCCCCAGAGCTGGAGCAGGCGCGGCCGCAGACCAGCGGCGAGGAAGAGCTACAACTGCAGCTGGCGTTGGCCATGAGCCGAGAGGAGAGCGAGAAGGAGGAGCGAACTCGCCTGGGAGATGAGTCGTTGCTCCAGAAAGCTCTTGaagagagtaaaagagaaatGGAAGCCAAAGCAGGAGGGTCTGCCATGTTGGATCTGATGGATATTTTTGCTCCGGTCTCTGAAGCGCCACCCAGTGCCAGCCCGTGGGATCAGTCTGGAGCTGGTGGTCACGCGCAGGCTGTGGGACCGCTGAGGGTCGACCCGTGGGATTCTCTGGAACCAAGCTCCTCAGCTCGAGGTCCTGGTAGCTCCTGGGCAGCACCTTCCAGTCTTCACTCTCAGCCCTGGGACCATCGGTCACGTCCTCCGGACCCATGGGAAGCTCCTCAGAATGCCCCCAGTCCTGCTCCCTCAAGTCAGACATGGCTCTCAACTGCGGCCCCTGCAGCCACAGGAATAGATCCTTTCTCTCCTCTAACAGCAGACAAAAAAGTATCTGCTGTCCCAGTCAGAGGCTCGTCACCACGGCCCGGGAGTCCCACAGATGGAGATCTTTTTGATGACGCCATGGATGGAGGTCAGGTGAACGTTAACGGTCGTAGTGAGGGAAGTCCAGAGTTATTTGACTTGTCTCGTTTGGGAGAGAGTTTAGCAGAGCCAACGCCTCGGACCTGTCGCACTCCGGAAGCCTTCCTGGGCCCTGCAGCGGCTTCGCTCGTCAATCTCGACTCCTTGATTCCGCCAAATCAGGCTCCTAAAAACCTAAACCCGTTTTTAACAGGTGTGAGTGCTCCTTCTGTCACAAATCCATTCCAATACGAGCAGCCACGGCTCACGCTCAGTCAGATGCGTCCTAGCTCCACGTCCCCTGCTCCCACCTCGCTGCAATACAGCGCCTCTCTGCCTCTGCCTGCCAGCAATCAGCCTTTGTCCTTACCCAGCTCCTTCACCCAGCCTTCAGAGGGACACGTTAACATAGCCGGGAACCTGCCTCAACCGCTGCTCCCTCTctcatccacatccacatccacacacGGACAGCCAGATCAGAGTCAGAACCCCTTCCTCTGAGGGCTGGCGTGAGCAGAGCTACATGTGGCCTGAATGTAAGCTTGCTGGCCTGAGTAACAATGCTTATAACGGAGTGACGATTTAACTGCAGACTTGGATCTAAACTGGAATATAGTCCAAATTAAAGACACTACTGTTTTATACTGGCTAACTGTTTTCACAGCTCTTTGCTATTGCTACTTATCATCTTATATCCATCTGCACTACAGAACCAATGTGTCTTTATAATCATATAAGCAAACAGCacaaatttcttttcttttttcttttttttttttaaatataggaTCATGATCTAAATTCAGACCAAACTTCAACCCATGAAATGTAACGACCAGTAACTTTACAACACGTTACAGCTTCACCGATCTCTCTAGACCTGCTTTGGTAATCCTTCCTTTAGTATTCCATACACCCTGGTGACTCCCTGTTGCACTTTCCTTCTGTATTATTCATTATGGATGACTGATATCAATGAGCGGAATAGCATGGAAGCTAGCCAACAGCCCCATCCCGATAATGAAGCTCACTCAGTCAAGGATGTCTAATCAGTGTGCCAGATATATAACACCAGaccaaaacctgttttttttttaaccatcattGATATTGGCTGCTAAGTGAACACACTTCATGAAGGGAATGAATTTACTGTGGAGTGATGACATACTAACAGAATGTGTGAATAAGAGACTGTTATGGAAAAACATTTCTCATCAAATATAGGAATGAAAATGCAACTTGCTGTCAACTAATGTATGATTGCTTTTCTTCATGGTTGTGCTTTGCGAGTTTCATCACTTACTTGATGCATCAGTAGTTAcaatatactttaaaaaaaaaaaaagtttagacaAAAAAAGGGCAGCTTTTTATAACCCAGGACTAGTTaaggtgttttcacacttggcctgaATACTCAAGTCTCTAGCCAGGAGCAATTCTGGTGTAATGCAATAACACTATCTgcatctgtatttgtttagtgcttcagatatctgtattcggatttaaaccagaagtgcttgtggcctaaaccagatttattatttgaatgaaatatgaaGAAATGACAGCAGTGTCAGCACggtgtgtgtgaattctggctctgacagtttctcaacctcagctacatcacgcCAATGCATaactggtctcaactagagatgcaGAGAACTGTGTTTTAATCCCACTGACACAATAACTGCTTTTGTTTGCATCAgcttgtgatattttctaattgattaaattttattagcattttattttatttaatttagcaaaatatacacaaattagTAGCctcatttaaaccactgcagccctgaccaggcagttactgaTGAATATGTGAATGCATCACACAGTAgcggtctttctttgtcccgcaagcttcatatctgactgcttgcTCATTCCTACATTTAAAGTAAACACTTCCCACTAAtgcgattattattattattattattattattattattaggcttttTTTGTTACTGCATCCTGTGAGATCTCAGTCTCaatacacacctctagtctcatcTGAACCCGATGCCCTATGGATCTTTCTGGAaagcattaaatatatttttatttgtatctgttcattccgaataatgtattcatttacatCTCTACACTATGGTTGGACATTGGCTGATGTTTTCAGTGAAAAAGTGGCCACTTGAGGTGGAGCAGAACTCCTTGGAtcacatttgtgtttaaaaactgcattttgcaCTCAATCACACTACTTTTTGGTGCAAAAGGGCAAGTGTGAAAATTCCTGGAATACTGGCTCAAACTATTTAATATCGCATCGGTTGACTGTTTGCTGTGAGTCATATCCAAGCATCATCATAGCGTCTTCATAGCGAGACTGAAGTTCAACTTATTCTTGTCATATCACATCATCAGGCACAAAAGTGTGAAGTAATGCAGATGATGTTGAGCGGATTAGACCACCTCCGCTGCATTTTAACTCGGCTTGAGAAACATTAAGCTGTTCTGACCATGGTGCAGTCCTAACTCAGATGTGTGCATCATTCTGTAAGGTTAAGTTCTGTGTGTCAGTATCTTCCACGATCTGTTATCAGGTCAGTCAGGTTGAGTCGAGTCCAGCCAGTTGAGCACTTCCTGAAGGCCCTTTCCAGAGCGAGCACTGAGCTCTAAAACTGTGATCGATTGAGGAGCGGAGGCAATGATGTCATCCATCCTGAAGAGTGACTTCATTTCCTCTAGCGACATGGTGCATGGAAGGTCCCTAGAAAgagaataagaaataaaacatttgcaaCAAGCAAGCTGTAACACTGAAATACACCTGGAGTGCTTCCTAAAACTCTTAACTGATACCACCGTGATTTCTCCATCCTAGGTCTTTCAGCTCGTGACCTGGAAATCGATCGAAATCCGTCATAGAATTGTTTACGCTCAAACATCAAGATTTAAGAGTGTGATGTATGCATGCAATAATGTTTCAATCAATAAGTAAATCCACTCGAGTCACTTTAAAGTGAGGCTTCAGTAAATACGGTAAAATGGTAAATACGTTTGTTCTTGATTCCTCCTGtgctcattttattttctatgaGCTAAGAAGcaagaaaaggaaatgaggaAGTGGAAGTAATGAAATGAGTGAATCCTGTGACACATTTTAGGAGTTAGATTGTCACTGAGAACAcggttgctgattattttttacttgAAAAGCACAATGCTCATTAAAAACGGCAGAGTCTGACCTCTTGTTGAACAGCACGAGCACAGAGGCGGACCGGAGCGGCTCGGCCGAGAGAACGCCCAGCAGCTGGATGCAGGAGGAGGAAATCTGTGTGATGTTGGCAGAGTCGACCATGAACTGAAGACGAAAACACAGTGTCATTTTTACATGAGCATTTTGGAATGTATGAAAAAGGGCATATTCATATTTCAGTGGGGAAAAAGAATCTAATTGTGCAGCATGTGAAAgtcatttttacagtgtggagtattaataaattatgtaCTGATATTGCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU400554 lncRNA upstream 3673 4326052 ~ 4326495 (+) True G338147
TU400553 lncRNA upstream 11067 4316550 ~ 4319101 (+) False rsad1
TU400503 lncRNA upstream 61713 4268246 ~ 4268455 (+) True G338116
TU400439 lncRNA upstream 74269 4255557 ~ 4255899 (+) True G338057
TU399638 lncRNA upstream 286979 3995255 ~ 4043189 (+) False G337381
TU400686 lncRNA downstream 263833 4616324 ~ 4620273 (+) False pbx4
TU400711 lncRNA downstream 325026 4677517 ~ 4679625 (+) True G338252
TU400706 lncRNA downstream 345941 4698432 ~ 4708744 (+) True brd4
TU400705 lncRNA downstream 365706 4718197 ~ 4731105 (+) True G338246
TU400720 lncRNA downstream 405363 4757854 ~ 4762602 (+) True LOC113546199
XM_034298715.1 mRNA upstream 5132 4307922 ~ 4325036 (+) True rsad1
XM_026946086.2 mRNA upstream 61989 4263839 ~ 4268179 (+) True zgc:103625
XM_026946014.2 mRNA upstream 262224 4061506 ~ 4067944 (+) True LOC113546255
XM_034298498.1 mRNA upstream 281638 4039819 ~ 4048530 (+) True crb3a
XM_034298635.1 mRNA upstream 353911 3967036 ~ 3976257 (+) False tecra
XM_034298491.1 mRNA downstream 6406 4358897 ~ 4368269 (+) True LOC113546181
XM_034298488.1 mRNA downstream 26668 4379159 ~ 4401024 (+) True LOC113546170
XM_026945923.2 mRNA downstream 26668 4379159 ~ 4401024 (+) False LOC113546170
XM_034298490.1 mRNA downstream 26668 4379159 ~ 4401024 (+) False LOC113546170
XM_034298489.1 mRNA downstream 32197 4384688 ~ 4401024 (+) False LOC113546170
XR_004577078.1 other upstream 1937690 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 1937696 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 1937793 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 1960092 2358116 ~ 2370076 (+) False LOC113546300
TU399169 other upstream 2008751 2317025 ~ 2321417 (+) False LOC113546301
TU400576 other downstream 31 4352522 ~ 4355029 (+) True G338163
TU401842 other downstream 1987016 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 2252166 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 2358524 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 3930469 8282960 ~ 8285204 (+) True G340208

Expression Profile