RNA id: XM_026945983.2


Basic Information

Item Value
RNA id XM_026945983.2
length 1603
RNA type mRNA
GC content 0.49
exon number 2
gene id LOC113546219
representative False

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 3297910 ~ 3305283 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTATGAAACGCACAGTCTGAACCTTCGCCATGGAGCAACATGGCCGCTGTTGGGACGTCGCCTAGTCAGGAAGGTGGAAAGAACAGAAGTAGCAGCTGAAGGTACTTGGGACAATGTCGAACAAATCGGGGTGTAAGTTGTGTCGTTCTGTGTGGCACGCGACCTTGCTGCTGTCCACCTTGCTCATCGGTTTGCTCTACTACACCCCTTCCTTTCGATGTATGACACAAGAACTTGAAGAACCCATCATGAACCCTGCACACCGTCCCGTCTTGGTGCTCATCTGGCTCTGGCCCTTTAACCAGACCTTTGACCTTGACCTCTGCAGCTCCCACTTCAACATTCACAGCTGTGTCTTAACAGCCGACCGgaatttctttaataaagccGATGGTGTCCTGATCCACCACCGGGACATCGCTTGGGATGCGTCGAATCTCCCGCAGTTTCTTCGGCCGCCCCATCAGAAGTGGATCTGGATGAATTCCGAGTCACCGTCGAACACGGCCCGGATCCCCGGCCTCGACAACCTGTTTAACATCTCGCTGAGTTACCGCAAAGACGCCGACATCAGCGTGCCTTACGGCTCTCTGGTTCCAGTTGACCACCAGTTTGAGGACATTGTGGACTTTCTACCTTCTGAAAAGGACAAGCTAGTCTGCTGGATCGTTAGCAACTACAAGCCAGAACACGGGAGGGTGCAGTACTACCAGCAGCTGCGCAAGTACGTCCAGATTCATGTCTACGGCGACTGGTTCGAGAAGCATGTTTCCGAAGAAGAGTACAAAGACATCATCTCGAGCTGCAAGTTCTACCTGTCCTTCGAGAACTCCGTGCACAAGGACTACATCACAGAGAAACTGTTCAACGCCCTGGATCTGGGGGCCGTCCCCATCGTCTTTGGCCCGTCCAGGCAGAACTACGAGCGCTTCGTCCCCGGCGACGCCTTCATCCACGTGGACGACTTCCCTTCCATGAGGGCTCTGGCTAGGCATCTCTTCTTTTTGCATCGAAACGAAGCCTTGTATCTCAGGTACTTCAGATGGAGGAGACGTTTCCGAGTAAAGATGTCTTCCTTCCCGGTGGAAAACGCGTGCCAGTGTTGCGAGTACATCCGACGGAACAGGCAGTATCAGGTGCTTACAAATCTGTATCAGTGGTACTGGGATACGAGCGAAGGACTTGACCTGCCACCGTCCTTCTACTAACCTGAACACAACTTTCAGTGCCATGagactttttcttttccctatTCGCTGCCTCGGTCAGACTGCTCAGGTAATTCATCAATTTGAATATAAATCTGgcatgtgtatgtttatgaATTCAGGTCTTTTATCACTGATCCTGAAGGCTGGAATGTTGGGACTTGATACTTATCTGTACTCacatgtgattatttatttcttacaacacaACACTCCTTGTTTCTGCATCTGTCAGCTTAAAGACTGTGAACATTTAATCAATAGCGACTGTTCTTGTTGAAGAAAAGGAGTTCAATTCAGACAGAGATTGTTTTCTAGCTTCTATGATCATAATAAGCTAAAAACAAAAGACCTGAAtgaaaaattcaataaataaatgcaattaatGCAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU399479 lncRNA upstream 1859 3212511 ~ 3299308 (+) True G337233
TU399433 lncRNA upstream 198976 3095997 ~ 3102191 (+) True G337197
TU399424 lncRNA upstream 266773 3033844 ~ 3034394 (+) True G337195
TU399423 lncRNA upstream 281757 3019110 ~ 3019410 (+) True G337194
XR_003404701.2 lncRNA upstream 305896 2926524 ~ 2995271 (+) True LOC113546290
TU399552 lncRNA downstream 184570 3489853 ~ 3491029 (+) True G337304
TU399520 lncRNA downstream 405419 3710702 ~ 3712919 (+) True G337273
TU399623 lncRNA downstream 437854 3743137 ~ 3745935 (+) True G337374
TU399611 lncRNA downstream 454373 3759656 ~ 3762176 (+) True G337363
XR_003404699.2 lncRNA downstream 464302 3769585 ~ 3771026 (+) True LOC113546270
XM_034298426.1 mRNA upstream 28240 3268938 ~ 3272927 (+) True znf750
XM_034298349.1 mRNA upstream 163194 3128704 ~ 3137973 (+) True si:ch211-165g14.1
XM_034298622.1 mRNA upstream 173437 3112241 ~ 3127730 (+) False mfsd13al
XM_034298474.1 mRNA downstream 119022 3424305 ~ 3635392 (+) True adgrl1a
XM_034298475.1 mRNA downstream 119022 3424305 ~ 3635392 (+) False adgrl1a
XM_034298476.1 mRNA downstream 119022 3424305 ~ 3623699 (+) False adgrl1a
XM_034298524.1 mRNA downstream 417906 3723189 ~ 3732164 (+) False tnfsf18
XM_034298523.1 mRNA downstream 419580 3724863 ~ 3732164 (+) True tnfsf18
XR_004577078.1 other upstream 908689 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 908695 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 908792 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 931091 2358116 ~ 2370076 (+) False LOC113546300
TU399169 other upstream 979750 2317025 ~ 2321417 (+) False LOC113546301
TU400576 other downstream 1047239 4352522 ~ 4355029 (+) True G338163
TU401842 other downstream 3034224 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 3299374 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 3405732 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 4977677 8282960 ~ 8285204 (+) True G340208

Expression Profile