RNA id: XM_026946017.2


Basic Information

Item Value
RNA id XM_026946017.2
length 6542
RNA type mRNA
GC content 0.50
exon number 17
gene id camsap3
representative False

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 4798341 ~ 4840522 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCTGCCAGAAGCGCACAGCGATGCGGTCTCTGAAACGGGGTCAGAAAATAACCAAATATCCGCAAAGGCAGTGAAACGGCGCTCCGTGGCGGGTCGGAGGCGTGTTTTGAAGCTTTGTGGCCTTACATGAGGATGAAATAAGACTGGTTTTGTATGAATAagaagcacttttttttccccggaTCCTGGTTTTCCGTGAAGGGGACGCCACCCGACATCCGCGTTTTCACTCCGCGCAGCGGGGTATGAAAGGATGAGCGCTTGATTCTGagctttctttgcttttttacGGCACTACCTCGCCTTTTTTCCTCCATAAGGCCTGTCTTTTTTAAAGGGGGGGCTCGCTATGGTGGACTCAAATGCGATGAGGAAGACTTTCGTGGTCCCGGACCTGAAACCTTTGGATCAGTACGACATTAACCGAACCAAGATCTGCGCCAGTGTGGGCTGGCTGCTGGCGAAATCTTACAGCAATGCAGACAATGTTCCAGTGGAGCTGCGAGACCCTTTCTATCTTGACCAGTATGAGCAGGAGCACCTGAAGCCCCCTGTGACGCGGCTGCTTCAGTCTCCCGAGCTCTACTGCCGAACCTATGGCCTGTTGGTAGCTGGGGGCCCCGGGGCCAGCGGGACTCCAAAAGACAACGCCGTCCTCCTACAGACCCTCAGCCAAAAGGGCTTAACCCCTAGAGACCAGAACGTCCCAGTGACCGAAGCAGACCTCCGGCACAAACCTATTAAAATGAGCGCCCACTTAGCAGTGATGGATGCTTTAATGGCGGTGGGAGCCATGGAGACCGTGAGGGTGAGCGGAGGAGTGGAGAGACTCGGGGGAGAAGATGACTGGGAGAGAACGCTGCTGCACTGGGTCAACACGTTAAACGAGAAGCTGAGGGAACGCACAGAGAGTGACCAAAGCCAGCAGAGTACAGAGCCACAGCCTGTTCAGGCCTCGCTCCGGTACAGGAAGGATAAGCTGCTGTCTAAGCTCAAGCCCTGTTTTCCTGTCGTGAATGAAGTGAAGGATCTCTCTAATGGCTGTGCCATAGCTGCCGTCATACACTACTACTGTCCTGGCCTGCTGCGCTTAGAAGatattTGTATGAAGGAATCCATGTCTTTGGCCGACAGTCTTTATAATCTTCAGCTTATTCGTGAGTTCTGTGAAAGTTGTTTGAAGAGCTGCTGCCCCCTGGTGTTGGAGGACATGATCTACAGCCCACCTGAATTACGGGTGAATATGCTGAGCTTTCTGGCAGAGCTCTTGTATTGGTTTGAAGTGTCAAAGCCCGAGTTTGTTCAGCCTCTGAACGCCACGGAGCTCAAAGAGTCCTCTGGAAGGACAGAAAATGGCAACAACGGTTCTGGCAGCAGCTCTCCCTCCTTATTTAAAAAGCCTTTCTTGCCAATATCCCCTGCCACACCAATTCCAGGCTCATTGACTCAGTCTACCTCAATGTCTCATGTAGAGGCAGCTGGACGATCATGGACTAAAAACCCTCTCAGTCGTCCCCTGTCATCTGCTGTGTCCTTCAGTATCCCCTTTGGTCTGGATAGTGATGTGGACATAGTCATGGGTAACCCTGTCATCATGCGCTCTGTCAGCTCAGATAACCTAAATCCTGCGGGTCAGCCTGTGAAACGTGTCCATTACACCCCTCCAGAGGACATCAGCAGGTCTCCAGGACCTAACGGCCCCCAGCGTGCCTCTTGGGCCTCCCGTAGTCCTGCGGTGCCCCTCCTGGCCGAGGAGAATGGACTTGACGCGGGCGACGCAGCTGGGTTGCCCACCATTGAGGAAGCTTTGCAAATCATTCACAATGAGGGAAAAATGGAGCCTCGTTTACATCCGGACGGAGCGCCTGATGGATTCTATTTGCACTCACCAGAGGACCCAGCTAGTCGTAGACATAACGGTAGTCCTGCTATCCTCAGCGGCTCCGCCCCTTCTAGTGCAGGAATGCAGTACAGGCCAACGGGAAATGCAAGCCGCACCAGACGTACATCTGATGGCTCACGGGATGACGACTCTGTACTGAGAGATGGCAGCGTGGACTCTGATGCCTCTGAAGATCTTCCAAAAACTCAATCCACACCCACCACTCCTGCAGCTGGTGCCCGGGTGGCTAATTCGTCTGGGCAAGAGACCCCAGACAGCGGTGTGAAGATGACTAGCTTCGCTGAGCGTAAAAAGAAACTGGCACAGGACCAGCCCATTCCCACCGAGGAACCACCGATGACCACCTGGGCAGCTAAAAAGACACAGGAGAGCCCCAGCAAAAGCCCGGCGCTCACCAGTGAAATGTCAGAGCTTGGGGCAAGACTGGAGGAGAAGCGCAAGGCTATCGAGGCTCAGAAGAGGCGTATCGAGGCCATTTTTGCTAAGCATCGACAGAGGCTGGGCAAGAGCGCCTTCTTGCAGCTGAAGAAAGAGCAGGAAGAGGGTGATGACAAGGAAGAAGGTGCGGAGGAGGTCAGTGCATCCTCTACAGAGGAAGACCTAAGACGCATGTCATTGGACGAGAGACTAGCACGCATAGAGAGTGATGAAGAAGGTGATACGAAGCAGGAGAAGGAGCGCCCTCGAGATGACGGGAAGGTACAAACTTCTGCACAGCAGACttctaaagaaaaaacagtggCAGGAGCATTGGGTGAGAAGACCAGTGTTCCGTTGGGTGATTATAACAATGCGGTGTCAAAACTGAATGCAGCTTTGAGCTCGCTGCAGAGTGATATGCAGCGCTTGTCTGAGCAGCAGAACCAGCTGTTGAAGAAGAAAATCCCCCCTGCCAACCAAGCATGGGTCATCTCACCCAGCACGAAGAGCTCCACCGCAGCAGCACCTCCACGTCTGTCCAGGGAGTCAACTCGCGATTTGATACCCAACTCTGCCTCCTCATCACCTTCTCCATCTCGCAGAATAAGCGCTCAAGCAATTCCCCCGAAATCGCCTGGCTCCCACCGCCGGGCTCAGTCTGCACCTCCAAAAAGCCCCAAAACTCAGCACCACTCAAGGTCCGCAGATCCAAAGACGCCCGCGCTCACCCGGGTCATCACGGCTCCACAGAGTGTGGACAATATCCCTCATCGACGGAAAGTATCCCCTTGGCAATACAGAGACCAGACTTCATCTTCTTTCAGCATCGGCTCGCCAGTCCCCCAGAGTGACTCCCGTCCTCCCTCTCGACCCCTCAGCGAGGACCCCAGTGACGACCAAACCGTCTTCAGCCTGGAACTAGAGGGAGGCTCCAACCATTTTCCGGGCAGGAAGGAACAGCAAGGAGGCAGCAGCTCAGGTGCTCCATCAGAGTGTTCCTTTGAAAGCGACATCCCAGCATCAGCCTTCACCCGCAAACACAGCAGTCTGATCGAGATCCCTCTGTCCTCTCTGAGAGGGCTGGACGGAGAGGATGCTGAACATGGCCCTGACGCCGCCTCTGACTCCATGAGCGACCACACAGAGCCGGAGATGAAGGGTGGCGTCGGCTTTTTCTTTAAGCAGGATGAGGCTCGACCAGAGGACGAGATGGCTCAGAGGAGAGCTGCACTGCTGGAAAAGCAGCAAAAGCGAGCAGAGGAAatgaagaggaagagacaggagcAGGAACGAGAGAGGGAGGCGAGACGCAATTCTGTGGATGAGCTCGAGCGACCCCGGACGCCCTGCACGCCTCCCCCAGCACGCACTCCTCCCGCAGCACGCACTCCTCCACCAGCGCAAACTCCTCCTCCTGATGGAACTCAGTACCGACGCGGAGTCTTTACTCGGCAAGAGTACGAACGGCGCCATCAGCTCAAGATCATGGAAGACCTGGACAAGGTGCTGCGCCAGAAACCCACCACCGTCCGAGGTGTCAAGAAACAGCGGCCCAAAACGGTGTTCCGGGACGATTCGGGCCTCTCTCGCAGCCCAGCTAAAGGGTTGCTGGGTTCTAGACTGAATAAAGTGTATTCTCACTCCACTATGAACCTGTCCTCCATGGCCAATGATAGTGGGACACTTACCATCAGAAAATCCCCAAGTCGCTCTCACTCTCCGTCACGACTGATGTCTCCGGGCCGTGTGGCCACACAGAATGGTGATAAGGACTGGGAGAATGCATCCACACTTTCTTCTCCAGCTTCCATCCCTGAGTACACTGgACCCAAACTGTTTAAAGAGCCAAGCTTCAAATCCAACAAGTTCATTATCCATAATGCCATCTCACGCTGCTGTTTGGCAGGCAAGGTCAATGAACCGCAGAAAAACAAGATCATTGAGGAAATGGAGAAGAGCAATGCCAACCacttcctcatcctcttccgGGATTCGAGCTGCCAATTCCGGGCAGTTTACACCATGAACCCAGAGACAGAGGAACTGGTGCGTTTGACTGGCATTGGCCCACGGATCATCAGCCTCTCCATGGTCGAGTCTATCTACAAATACAGCTCTGACCGCAAGCAGTTCTCGGTCATCCCGTCCAAAACCATGTCCATGAGTGTGGACGCTTTCACCATCCCCAGCCAACTGTGGCAGACCAAGCGGCCCGGGACGCCCAAAAAGCTCGGAACACCAAAGTGAAGCAGACGGAGAATCTGAGATGGCCCAAATCTTTTCTCCCCTCTCCTCTAGTGGCAGAATGGTTCAGAGTCGGAGCTGGTGTGACTCCAGGAGAGTGGGAGAGTTCAAATTGTGTGGCAGTGATAGAAAATCCTCAGAGACTTATTAGCGAACCTTGCAGAACACCTCTGTGTGCATTTGCTCCagatttaaaaatcaaagaaggaagaatgccatttttttccaaGCCGTCACAACTCCAACAGCTGGCCAACTGGAATATCTTGTACAAAActcctgtatgtgtgtacttTTCATGCTTAAACTGTAGATGAAGTGACCATCTACAGTTCTTCCATTCCATCCTTTTAGTATGAGCTTATTCCGTCATCTCAGATCACCAGTGTGGGATGaagcactaacaccaacactaaacTCGCTGCTTTGCAGAATTAAACCAGAGCATAGTCTCTGCCACCTCTTTTATATacctttctcttttccttctcccCTTTTGCTTCCTGTTTTGCTCTAATCTCAAAACAGACCTAAAACTAGACTATGAATGTAGGGCACAAGCCAGCCAAGGGCTTCTCATTTTGTCTTTCGTCATGCGGGACTGGGATTTAGAAATCTTCCATGATTTAAGGTACTTGTTTATGCTCCTGTGCCTCTTGCTAACTGTCTGAAATGTGAAGTACGTgcctctcactcacacactcactctcctCTGCCTAGCCATTACTCTTACTTAAAGTAGGTGTCtggatgtttgtttgtttttttaaatatctactTCTTTTGCTAGATTTCAGTATATCTGAGTAGACCTCACGGGCCTCAGGTGAGCTTCATTTCCACTTCAGTTTATTAAGAACGAATGGACAACAACCAATACAAGATGTGcttttacattaataataaggTATTTCTACTCTACTcgtctgtaattaaaaaaaaaagtaggggaaaaaaagaatcagcgattatgtaatgtatattaTGAATGctgttaatgatttttttttttcatttttgacaaTGATTTGTATATGGCGAAGAGAACATTTGTAAGATATGAATAAGCTGCCGTGTGGCTTCAGCATTagcagttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagtgaaagaATGAGTGATGAGAActaacagagagaggagaagattaaaaaataaagattgaaCATCTGCAGAAATGTGATTTCTCTTATTTAAAGGTTGAAAAGTACTTCTCTGTGAGCGAACATAGAGCAGGCAACGatggataaaaatattattattagattgaTGCTGGTGTCTCAAAATTCGACAGTGATAGCGAGAACAAGCTCAAATCAGTGTATGTTGGCCTTATTCATTTCGGGCGTGGTGCGAGTGGCCCACTTTTCTGTAGCCAGAGGGCATGTGGTCTGTTTTTCCTCTGAAAACCTGATCTAAGCACTAGAACAAGTCTACTGCCTCCCGTTTGTGTCAGCCATTCGCAGATCTGAAGTGAAGATGTGAATATTTTTGTACAGAGAAACGTTGTGAAGGTGTTGAATATAAGTGTATAATTATGTAaagtgaatggtgtgtgtgtgtgtgtgtgtgtttgtgtgttggtcCATATGAGAGAGTGATATATTGATAAAACTGGAGTCAGTGCAATTGTCCTGTAGAATGTTATGTTGGCAAAGGTTTATTTATTAGGAAGGGACTAGCtggaattattattttctttattgttttgtttcagattttattatttatgtcatGGTAAGACGGTGAATCACATTTATTTCGTACTTTAAAGGCACATTGGccattttcttttgttatgtCACCATGTCTGTCAGTCCAATCGTTCTGTCCTGCCTGATTGTTCATCATTACAGATCCGTCAGCTGGAGCGACTGGATCtgattaataaaatcatttttaaatcatccGGCTCATCATCACTCACTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU400698 lncRNA upstream 18013 4761313 ~ 4780328 (+) False stxbp2
TU400720 lncRNA upstream 35739 4757854 ~ 4762602 (+) True LOC113546199
TU400705 lncRNA upstream 67236 4718197 ~ 4731105 (+) True G338246
TU400706 lncRNA upstream 89597 4698432 ~ 4708744 (+) True brd4
TU400711 lncRNA upstream 118716 4677517 ~ 4679625 (+) True G338252
TU401186 lncRNA downstream 400803 5241325 ~ 5241584 (+) True G338658
XR_004577050.1 lncRNA downstream 536684 5377206 ~ 5386152 (+) True LOC117595846
TU401215 lncRNA downstream 547466 5387988 ~ 5392192 (+) True G338683
TU401337 lncRNA downstream 591327 5431849 ~ 5432264 (+) True G338799
TU401352 lncRNA downstream 684518 5525040 ~ 5526609 (+) True G338814
XM_026946031.2 mRNA upstream 3783 4781291 ~ 4794558 (+) True xab2
XM_026946033.2 mRNA upstream 17955 4763178 ~ 4780386 (+) False stxbp2
XM_026946032.2 mRNA upstream 17955 4763179 ~ 4780386 (+) True stxbp2
XM_026945962.2 mRNA upstream 36107 4757814 ~ 4762234 (+) False LOC113546199
XM_034298543.1 mRNA upstream 45672 4717540 ~ 4752669 (+) False brd4
XM_034298522.1 mRNA downstream 36873 4877395 ~ 4881875 (+) False LOC113546287
XM_034298521.1 mRNA downstream 37794 4878316 ~ 4887345 (+) False LOC113546287
XM_026946059.2 mRNA downstream 37794 4878316 ~ 4881875 (+) True LOC113546287
XM_034298550.1 mRNA downstream 174308 5014830 ~ 5096273 (+) True col5a3a
XM_026945958.2 mRNA downstream 302704 5143226 ~ 5254263 (+) True olfm2a
TU400576 other upstream 443312 4352522 ~ 4355029 (+) True G338163
XR_004577078.1 other upstream 2405863 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 2405869 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 2405966 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 2428265 2358116 ~ 2370076 (+) False LOC113546300
TU401842 other downstream 1498985 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 1764135 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 1870493 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 3442438 8282960 ~ 8285204 (+) True G340208
TU403493 other downstream 4072406 8912928 ~ 8915844 (+) True sem1

Expression Profile