RNA id: XM_026946045.2


Basic Information

Item Value
RNA id XM_026946045.2
length 3893
RNA type mRNA
GC content 0.45
exon number 15
gene id adck5
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 1610614 ~ 1629996 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGAGACCCGTTTTTCACAGGGAACTGTATTTCATGGCACGCTGACAGCACATACTCTCGACTTTAGCCTTTATCAGGAGGTCAGTGTAGAGGAATAAAGCCGCTTTTTCACCTCAGCATGGCGGCAGAAACATTACAGAGGttacGGGTGTGTCGGCGTCACCTCGCTCTGCTGCAGAAATATTCAAATCTCACAAACACTCAACTGCTGCTGCACAAATCCTTCAGCACACAGAGgagtgggcgGAGTCTCCGGCCTCTGaggaagctgctgattggtgtGTCAGTGGGCGTTCCCGCGGCGGTGGGCGTGCGCTACGCTCTCTCTGACCCCAAAGacaggaggaagatgaggatATTAGTGGAGGGCGCAGGACGCTTCTGCAGATCTCTGTATATCGGATTTCTGATTTCAGTGGATTACTGGTGGACGTCCAACGTTGTTCTGCGCGGCGTGGATGAGGAAAGGCCGGAGTTCACGGCGGCCATGTCCGCGTGTCACCAGCGAGCGGCGGACAGCATGGTGGAGGGAGCGGTGAGGAACGGAGGAGTGTACATTAAATTGGGACAGGGCCTGTGTTCGTTTAATCACCTCCTCCCTCCGGAGTACATCCACACGCTGCAGGTCCTGGAGGATAAAGCGCTGAACCGCCGCTACAAAGAGgtagACGCTTTATTCCTAGAGGACTTCAACTCCACGCCGGATAAACTGTTTAAGACGTTTGACTACGAGCCCGTGGCGGCTGCTAGTTTAGCGCAGGTGCACAGAGCAGAGCTGCATGATGGGATGCCCGTAGCTGTGAAGGTGCAGTATATAGACCTCAGGGATCGGTTCGATGGAGACATCAGGACGTTGGAGATCCTGCTGGATATAGTGAAGCTTATGCACCCGAGCTTCGGTTTCCGCTGGGTCCTAAAGGACCTGAAGGGAACGTTGGCGCAGGAGCTGGATTTCGAGAACGAGGGCAGGAACTCGGAGCGATGCGCCCAAGAGCTCAAGCACTTTAAATTCGTCGTCATACCCAAAGTGTTCTGGGACCTGACCAGCAAGCGCGTCCTCACGGCCGAGTTCTGCGAAGGCTGCAAAATCAACAACATCGAGGAGATCAGGAGGCAGGGCCTGAGTTTAAAAGACACGGCAGATAAATTCATCAGGACTTTCGCAGAACAGATATTTTACACCGGCTTTATACACGCAGACCCACATCCTGGAAacgtgttgGTGCGAAGAGGTCCTGATAAAAAAGCAGAACTTGTTCTCTTAGATCATGGACTGTATGAACACCTCAGCAAAAGTGACCGAGCCGCTCTGTGCCAGCTGTGGCGCTCCATCATCCTCCGAGACGAAGCCGCCATGAAGAGATACTCCAACGACCtcggggtcaaagACTACTTCCTGTTCTGCGAGATGCTCCTTCAGCGGCCGATCAACATGCGCGAGCTGGGTCTGGGGAACATCCTGAGCCGCGAGGAGACGTCGTACATGCGCAACATGGCCGCTCAGCGCTTCGACAGCATCATGGAGGTGCTGAAGGCTCTGCCTCGGCCCATGCTGCTCGTCTTCCGCAACATCAACACGGTGCGCAGCATCAACGTGGCGCTGGGCGCTCCTGTAGACCGCTACGCCCTCATGGCCAAGAGtgctgtgcgAGGTTGGGGTAAAGCCAGAGCAGACGAGTCGAGGCTTCTGCCCAGGGTCACTCTGTTGTGCTGGATTTGGAGTTTCTGGGAAGATGTGAAGTTTGAATGCGCTTTAAggtcggagatgatgatgatgagcgtGACTCGCTACGTGCTGCAGCTTCTCTCCTACTGCGGTTTCATCTCGCTCGATCAGGAGGTTTATCAATACCTCAAATAACCAAAGACTCAATAACTCGgctttactgttttattttatttaattttacaccCTGACATTAGAAGTGTAAACTCACGACCTTCCTCTCGTCATCTCTCTCATCCTGTTCAGTGGagctttttattctgtttcatttcctgtctcctggttttcacatttattttactttttttgaaaTGAATGAACCACTATGGAATCAACACTATGCAGATGATTTGTGCTTTAGCCATGAGGACTTTATCTGGACTAGCGGGGTGATAATACACCGCTAATAAAACCTAGATAATAAAACAGCATACCATGATAAGGTGCTGCACTCATTATATCTTGAAcatgtaatttaatattttaaattaataataataatgtaataatactttctttaaaaaaaaaaaaaaaaaaacctataagCTAATTAACTGGTGCGACCAGTTATCATCAGAAGAGACATAATTAGTGGAATGGAGTCGACTCGTGTGCAAGTAAAGTGTCACTGttccaattttaaaaatggaaagatacGGTACAACCATCCACCGAACGTCAGTGAGCGAGTAAAGAGGGGATTAATTAGTCAGAGAATCTGTTCACAGGACAAGCACAGCCCGGACGCCCTACGATGCTGGTATGAATTCGTatttggagtttgccaaaaaacataaaaactcaaaaacctgaataaaaatattctctggtctgatgagaccaaaattctGCTGTGTGTCCTTGGCAGGAACCCAACAATCTGAGAACACCATTCActctgtgaagcatggtggtggtagcatcacgtTTGCGAGTTATCCTAGGACTCCTATCCTTGTttcttctctgactaatcccttCTTCTGTTCGCGGTTACTGACTCTTGGTGGACGGTCTCCTctaagcagagtcactgttgtGCTGTTTACTTTCATTTCTAATAACGGCTTTAATGTCGCTCTGCAGGATGGGAATGCTCGCGATGATGATGcttttccagaactttatcCCAGACTTGTTTagcttcatgatgctgtttgtttagataTGTTCTCTAGCAAACTCGGGGTTCTTGACACTTGAcactttaattcaattttatttatatagcacttttaacagtggaccttgtcacaaagcagctttacagaaatctggatctaaaatttttatttaaatttatccctaatgatcaagccagaggcgacagtggtgaggaaaaactcccagagacGACGTGAGGAAGAAACTCAAACCTGTCCTCGTCTGGGTGAGGCCGGATAGCGCGATTATAAATCAGTTCTCTTctcaagcagtgctaagtgtgttaaaaggaacctgagtatgagcatcactagagttttaactttaagtttctCGTATCAGACTGACGTTATCATCTGTTCAAtactttaatcacacacaagTCGACTACATTCAGCTAATGATGCCACTTCTGATTGTAACTGCTCACAGCAGAACTTATGCAATCAGaacttttacattattttataaaaagaaatttccttcatttcagttttatggGATGTTAtgggggggtgaatacttatgcacagcaCTGTGAATGACCTTGCAGTCATACAGTGAAATGAGAACCTGATTACTGTGAGTGATGTTACGAATTTGTCGTATTAGCAGAAAAGCTGTAAAGTTGaggtttgttattttattgctCGGGAAATGATGATTACCCGAGTTTAACTCTTTACTGTTGTTCagcaggcctttttttttttaattaaatctaattttttaaatctggtttCAGCTGCAGGTGATTTACTGAATCTGATGAATCTGAGTTCAGGTCTTTTCACACAGCTGTACAATCTGTATTAGATTCCCgtcatataaattaattatttaattactgtttcagtcaatttgtttaaaatgatgatgattttgTTGCCATATTGTAATGAATGTAAAACCTGTGAAGCTGACTGCAATGACCTGAAGGACTCGTCGCACAGCGTTtcattttttatcattaaaaaaaaaacggaaagAATAACGTCCTCAT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function

KEGG:

id description
K08869 ADCK, ABC1; aarF domain-containing kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU398224 lncRNA upstream 22320 1586247 ~ 1588294 (+) True G336275
TU398401 lncRNA upstream 30314 1579795 ~ 1580300 (+) True G336406
TU398216 lncRNA upstream 59414 1549855 ~ 1551200 (+) True G336267
TU398386 lncRNA upstream 61384 1548991 ~ 1549230 (+) True G336391
TU398232 lncRNA upstream 61722 1548665 ~ 1548892 (+) True G336283
TU398446 lncRNA downstream 45061 1675057 ~ 1680296 (+) False polr2k
TU398200 lncRNA downstream 108167 1738163 ~ 1741007 (+) False G336256
TU398201 lncRNA downstream 108167 1738163 ~ 1741007 (+) True G336256
TU398210 lncRNA downstream 126189 1756185 ~ 1757404 (+) True G336261
TU398493 lncRNA downstream 191136 1821132 ~ 1842536 (+) True G336481
XM_026946046.2 mRNA upstream 1760 1596847 ~ 1608854 (+) True lix1l
XM_034298552.1 mRNA upstream 24152 1578998 ~ 1586462 (+) True prcc
XM_034298554.1 mRNA upstream 32458 1574337 ~ 1578156 (+) True mrpl24
XM_034298424.1 mRNA upstream 66083 1530514 ~ 1544531 (+) True mindy1
XM_034298418.1 mRNA upstream 88864 1499420 ~ 1521750 (+) False LOC113546241
XM_026946070.2 mRNA downstream 45044 1675040 ~ 1680352 (+) True polr2k
XM_034298432.1 mRNA downstream 53338 1683334 ~ 1701731 (+) False spag1a
XM_034298433.1 mRNA downstream 53370 1683366 ~ 1701730 (+) True spag1a
XM_034298574.1 mRNA downstream 174674 1804670 ~ 1842048 (+) False grhl2b
XM_034298573.1 mRNA downstream 174675 1804671 ~ 1842048 (+) True grhl2b
TU398302 other upstream 275084 1269809 ~ 1335530 (+) False G336334
TU398322 other upstream 283107 1325816 ~ 1327507 (+) True G336350
TU398245 other upstream 474507 1132988 ~ 1136107 (+) False mllt11
TU398147 other upstream 634293 973669 ~ 976321 (+) True G336213
TU398091 other upstream 815919 794117 ~ 794695 (+) True G336172
TU398432 other downstream 27321 1657317 ~ 1659459 (+) True G336433
TU398943 other downstream 246278 1876274 ~ 1945866 (+) True G336822
TU399169 other downstream 687029 2317025 ~ 2321417 (+) False LOC113546301
TU399163 other downstream 728120 2358116 ~ 2370076 (+) False LOC113546300
XR_004577078.1 other downstream 728132 2358128 ~ 2392478 (+) False LOC113546300

Expression Profile