RNA id: XM_026946047.2


Basic Information

Item Value
RNA id XM_026946047.2
length 3319
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC113546278
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 4445929 ~ 4451919 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAAAAACTAACCCCTCTCTAAAACGACGAGCTGAAAAAGGGTCGAGTTATCTTTAATTACCGTTCATTTACGACTTTTATTTTGGAAGCAAAATATCAAAATCTACCCGGAAGTGAAATCAACTTTATTTCCTATTGTTGATACAGTCTGGCGTAACTCCGCATCTCCTTCTTTATCGAACCCGGGGTTTTATCATGAGTTTTAGCTGCGAGTGAGGCTCAGTTTGttgcactgtttatttatttattttttgctcgtttttcctctcttttcggctaaaaaataaaagaaagaaaggatttaTTGTTGAGAGACTAAAGGCGCGAGTCTTTCTCTCGCCATGGCCGAGCCGCGTTGTTTTCAAACCCAGCTGAACTCCATCATGGAGATCATGAGCAGGGCGGTCGTGAGGCAGATCTGCAAGATCGTAGACAGCGACTTGGCGTCTTTACGACTGGAGCTGGAGCGCGCGCTTCACGACAACGCGGCTCTGGGAGACAAAATGCGCGTGCTCGAGAGCGAAGTGGAAACTCTGCGGAAAGCGGGAGCGCGCGCTCCGCGCAAGAGCTGCCGGTCTGTGTGCATCCAGACATCAGAAGTCGCTCCACCATCCATTAACGGCATCTTCGGGAAGGAGTGGTGCTCCAGTCTGTGGGACAGGAGGCCCAGGACAGAAGAGGCGGCGGTCGAGGTGGAGCCGGATGTGTCTGATGAGCCTGAAAACGATGAAGACAGCAATGTGCGTGCCATCAAAGAGGAGGTTTCTGAACAGGAAATCTGCGTCATCCATCCAACATCAAGGCGCAGAAGAAAGACGACCTCCGCTTCATCAGATCGTCATGACGTTTCAGAAGACATGGCTGATGACAACGCCAATGATGACGACATACACTTCATATCTGCAGGATTTCCGGAGACATCCGACGTCGACACCATGGCGCCGGATTCGCCGAGAGCCGCCGCAACAAAGCTCATATCTATGGATGGCACTGTTCAGCATGTCATAGTGTCGggcgatgatgatgacaatgacgatgatgatgttGAGGAAGAAGGTCAGCTGGAGTTTGAGCAGCACTGCATGCCCATTGAGTTTATGGAGGGTGAACGAGGAGAAGCCGCAGTATTTGAGAGACAGGACGAGGTGGAGCAGGAGGTGGAGCAGGACATTTTAACCGATTCAGAGTATATGACCGGCTCAGGTGGAGGTAGCGGtcacatttttaattacttcGACAGATTCAATATACATCAGCAACCCGGTCCAGGCGACGACTCGGGCAAGACGGACTTCACCTGTCCCGAATGTGGGAAGACATTCTTGCGCAGGAACGGTCTCACGTTGCACATGAAAAGTCACCAAAAGCAGAACGCGCACGCGTGCCGCACCTGCAAAGTCGTCTTCCCGCAAAAGAACCTCCTCCGAACTCACAAGTGTCTGCCTCCGGAAAAAACGCCTGCCAAAACGGCAGACATGAGGTTCCGCTGCGAGATGTGCGGCAAATATTTTCACTCCAAAGCCAACCTGAAGGTTCACTACGCCGTGCACACGGGAGAACGGCCTCACACGTGCAGCTTCTGCGGAAGAGGCTTCTCACAGAAAGGAAACCTTACCACTCACGAGCGCATCCACAAGGGAGAGCGGCCGTACATCTGCACCATCTGCGGGAAAAGCTTCACGCAGAAAGGCAACCTGACTCACCACCTGGCTATTCATAGCAAGATAAACGGCAGAATGAGGAACTCTGTTGAAAAATGGCAgtgactttattattattatttttttttttacatgcagtACGACAAAAAACTGTTGTATTGATTTCATCTCTGGAAAGAaagttttttaatcaaattttatttcacttactgtctttctctgtttgtcagtttttttcAAGTCTTTCAACACTTTGttttttcaagcattttttCTAGGTTCTTAACACCAAAATGTTACAAGAAACAAATAAGCTAATGTGAGAATTTTGTGTAACTAATGCCTGAGCCACACTAGAAGAGAATCAGGCTGATTCTTGCAGCCGTTTCGTCCTGATTTCAGGCTGGTCTTAAACAGTTGtgggtgtggagtgtgtgtataaacagaaatatgaatTGGGCTGCGTGGAAAGCAAAAAATACTTCCTGCAGAAACAATGTTCAGCTGGCTTTCACGAACGACATGACGTAATCACGGAGCGTCGTGTGTAGGCTTCGCTCATTGGGTCATGTGTCAAAGACAAGCCTGTGATTGGTGCAACCACCAATACATAACTGCAGAGAGTATGGAGtttgtaagtgttttttttttttttttgcgtaatCCTCGTAGACGTCGTCTACACATTAAGCACTCCTGAGCGAGGGCCAGTACGAAGCTTGTTAACTTGCGAAGGTGGTTTTGTCTTCGCACAATCCTCCGAGACATTGTCTCCACCTTTGGCAGCTGTATTGCATAAGCTCCGCCTCTCAGTAACGAACCAATCACCTTGTTGGTTAGCAGACATGCAGAACCTATTAGGGTATTAACACAGGGTGCTTCGCTTGCCATTTCCATAGATCTCATGTTACTTGCTCACAGATTTTAACACTGACTTCAAATCTGTGTTCGAAACATCATATCTGGTTTATAGAAACTGAACAGAACTGTTCGAGAGTAGCACCAAGATGGCCGCCGAATAGATCTTAACTCCTCTGATCTACACGGTCCAGTCATGGCCCCAgtttaaaatcataaataataaatattttccatGTTCACCACTCAACAATGAGGGAGTGTTCGTGAACACTGGCTCGTGTTCTATCGTGATCAATATAATCAGTGAGAGCTAAACTCTAGTCATCTGTAATCTTGTTTGTTCAGGAGGAACTCCACGAGATTCTACGATCTGAGTTCATTATTCTTGAGCAGAACCTGAAAGCgtgtggtgttttattctggGAGGATgatccaggaaaaaaaaaaaaaacatatgtcaTCATATCTGGCATCTCTCATACTTTTTAACGTCAGTTAGGATGGTATAAATGTCATAGTGTGGCCCAGGCATAAAGCTTTAATCTCAGCATCTCGTTTCTAGTTCATATGTCAATAGTTAATCTCAAACTACACTTGTAAAAGAAACTTTGAATTTGCATCAGTAGTATGGATTTTATGTACCAACCTCAAATATATGATGTATTTTAGAAAAATCTGGTGTGTTGTTTTCAGTGTGATGATGATATGAAGCACCTTCTACATACCTtcaagaaattatatatatacagtactgtgcaaaagtcttaggcacatgcaaagaaatgctgtagagcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU400579 lncRNA upstream 75718 4339204 ~ 4370211 (+) True G338164
TU400554 lncRNA upstream 119434 4326052 ~ 4326495 (+) True G338147
TU400553 lncRNA upstream 126828 4316550 ~ 4319101 (+) False rsad1
TU400503 lncRNA upstream 177474 4268246 ~ 4268455 (+) True G338116
TU400439 lncRNA upstream 190030 4255557 ~ 4255899 (+) True G338057
TU400686 lncRNA downstream 164405 4616324 ~ 4620273 (+) False pbx4
TU400711 lncRNA downstream 225598 4677517 ~ 4679625 (+) True G338252
TU400706 lncRNA downstream 246513 4698432 ~ 4708744 (+) True brd4
TU400705 lncRNA downstream 266278 4718197 ~ 4731105 (+) True G338246
TU400720 lncRNA downstream 305935 4757854 ~ 4762602 (+) True LOC113546199
XM_026945925.2 mRNA upstream 10964 4415771 ~ 4434965 (+) True slc27a1a
XM_026945926.2 mRNA upstream 10964 4416117 ~ 4434965 (+) False slc27a1a
XM_026945937.2 mRNA upstream 30675 4408012 ~ 4415254 (+) True ptger1c
XM_034298488.1 mRNA upstream 44905 4379159 ~ 4401024 (+) True LOC113546170
XM_026946062.2 mRNA downstream 19812 4471731 ~ 4476762 (+) False pgls
XM_026946060.2 mRNA downstream 19817 4471736 ~ 4476762 (+) False pgls
XM_026946061.2 mRNA downstream 20264 4472183 ~ 4476972 (+) True pgls
XM_026945943.2 mRNA downstream 25894 4477813 ~ 4494446 (+) True colgalt1a
XM_034298837.1 mRNA downstream 46598 4498517 ~ 4524100 (+) False gmip
TU400576 other upstream 90900 4352522 ~ 4355029 (+) True G338163
XR_004577078.1 other upstream 2053451 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 2053457 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 2053554 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 2075853 2358116 ~ 2370076 (+) False LOC113546300
TU401842 other downstream 1887588 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 2152738 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 2259096 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 3831041 8282960 ~ 8285204 (+) True G340208
TU403493 other downstream 4461009 8912928 ~ 8915844 (+) True sem1

Expression Profile