RNA id: XM_026946059.2


Basic Information

Item Value
RNA id XM_026946059.2
length 1908
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC113546287
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 4877395 ~ 4887345 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAGTGCAATGCAGCTTCTCCAGATATTTAACAGAAGATTAAGAAAGATTAAGCAGGAATCTGGATTAATCCTGATCCCCTGCTGGTCCTCACTGTGCACTGTGAGCTTCATAGAGCTGAAAGTGGAGGAAGCTGTAGTTGCTCTGAGACAGGAAGTGGTCACTGAATGAGGCCCAGAGCATCATGGGAACTAGAAGAGTGTTGGTGACAGGATGTTCCACTGGGATTGGACTGGCTGTGGCTGTGCGTCTCGCCAAGGATGAACTGAAAAGGTTTAAAGTCATAGCCACGATGAGGGACGTGGAGAAGAGAGCAGCACTGGAGACAGCAGCGGGAGACACACTGGGAAGGTCGCTGGAGATTCATCAGTTAGACGTCTGCTGTGAGGACTCCATCCGAGAGTGTGTGAACAGCCTGCCTGACAGACGCCTCGACATATTGGTGAGTAATGCTGGCATGGGGATGATCGGGCCGCTGGAGTGTCAGAGTGTAAAGGGCATGCAGGACATCTTCAACACTAATTTCTTTGGCTTGGTGCGACTGGTGAAGGAGGTGCTTCCCGACATGAAGAGACGACAGAGTGGACATATTGTGGTGATGAGCAGTGTCATGGGAGTTCAGGGACTACTCTTCAATGACGTCTACGCTGCTTCGAAATTTGCCGTAGAGGGCTTGTGTGAGAGTCTTGCAGTGCAAGCTATGAAGTTTAACATTAAGATGACTTTGGTGGAGCCGGGGCCGGTACTGACAGAGTTTGAGAGGAAGGTCTACGAGGACGCACAAACCATGGACTTGTCCGGCACAGACGAAGAGACGGCCAGAATTTTCCGTGAGATTTACCTTCCCTACTCAAGAAAGGTGTTTTCCTCACTCAGCCAGAGCCCTGAGGAGGTGGCAGAGCAAACGTTCCAGCTGATCGTATCAAAGAATCCTCCGTTTCGTCACCAGACCAATCGCCTGTACACGCCCATGACGGCCATGAAGCACGCAGACCCTACAGGACGCCTGCCGCTAGACGCCTTCTACAGGATAATCTTCCAGCACGACCGTGTGTTTAACGTCAGCCTCGGCTTCATGCGCTTGCTACAGAGGAGAACGAAGAAGTCTAAAGTGTGAAAGGAGCGAAACATCATCCCAGGCATGACTTTTGAATTTTAGATGGATAGTAGAATGAATATAGAGTCAGGTCTAACTAGATGGCCACATATGTGTGGAATCTTACAGATTTTAATTATACTTTTAAATCACAAATGAGAAGTAATAAAACCCttggaggcatgctgttataggaacataatcaatgacggggtggtgtgatgtggcccattgtgaaagttgattattttcctataacagcatgttccaatGGGTTTAATTCCTATTACTATTaactaagttcattagaaaatactggaaggaacaaacaaaaatagtaacTGCAGTAGTAAGTGGGCGGgactggtcagaattccttcaggaatGGGCGGAAATGGGACACCTCCCGTGCACTCCTCCACCCTCGGGGCAGTGAAGTATACAggtcttgatttttttttaatgacatgatGATGCTGACTATCAGCTGATGTAAAAGTTATTATAGTTCTATGCTTAACTGACTGGCCAGTTGGTTTGAAAGGTTATAAAGAGTTTCCTAAAGCTCACTAACCTAAAAACAAGTGTAAAATAATGTCATTGACTGATAGAcgattgacattttttttacagtgaaagcATGATGACTGCAGATTTAAGTAATTATGttaaaaacaactttaattgttgatttatttcttttattcacaTTAATTACAGATTCTATAAGCAGTAAAAGTTATGAAAGAGAGCAGTGcagaagtgtgtttatgtgaaagcACACAATAAATGACACGTGACAGAAATGTAGTT

Function

GO:

id name namespace
GO:0006703 estrogen biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004303 estradiol 17-beta-dehydrogenase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU400698 lncRNA upstream 97988 4761313 ~ 4780328 (+) False stxbp2
TU400720 lncRNA upstream 115714 4757854 ~ 4762602 (+) True LOC113546199
TU400705 lncRNA upstream 147211 4718197 ~ 4731105 (+) True G338246
TU400706 lncRNA upstream 169572 4698432 ~ 4708744 (+) True brd4
TU400711 lncRNA upstream 198691 4677517 ~ 4679625 (+) True G338252
TU401186 lncRNA downstream 359450 5241325 ~ 5241584 (+) True G338658
XR_004577050.1 lncRNA downstream 495331 5377206 ~ 5386152 (+) True LOC117595846
TU401215 lncRNA downstream 506113 5387988 ~ 5392192 (+) True G338683
TU401337 lncRNA downstream 549974 5431849 ~ 5432264 (+) True G338799
TU401352 lncRNA downstream 643165 5525040 ~ 5526609 (+) True G338814
XM_026946017.2 mRNA upstream 37794 4798341 ~ 4840522 (+) False camsap3
XM_034298550.1 mRNA downstream 132955 5014830 ~ 5096273 (+) True col5a3a
XM_026945958.2 mRNA downstream 261351 5143226 ~ 5254263 (+) True olfm2a
XM_026945957.2 mRNA downstream 324269 5206144 ~ 5254263 (+) False olfm2a
XM_026945959.2 mRNA downstream 329491 5211366 ~ 5254263 (+) False olfm2a
XM_026929816.2 mRNA downstream 565118 5446993 ~ 5455237 (+) True ppan
TU400576 other upstream 523287 4352522 ~ 4355029 (+) True G338163
XR_004577078.1 other upstream 2485838 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 2485844 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 2485941 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 2508240 2358116 ~ 2370076 (+) False LOC113546300
TU401842 other downstream 1457632 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 1722782 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 1829140 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 3401085 8282960 ~ 8285204 (+) True G340208
TU403493 other downstream 4031053 8912928 ~ 8915844 (+) True sem1

Expression Profile