RNA id: XM_026946068.2


Basic Information

Item Value
RNA id XM_026946068.2
length 1452
RNA type mRNA
GC content 0.51
exon number 4
gene id cthrc1a
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 2059332 ~ 2065910 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAGCGCGCACAGGGAAtgagtactctgtgtgtgtttgggatgaAGATGGGagctgtgtctctgtctctctctctctctccgcttcTCCTCTGCTTCTGGCTCGTTTTTCCGCTCTGTGCGACCCAGAAAGCCAAAGAGAGGAGGACTGTGGGCGCCAGGGACACCGAATTCGTGGACAAGTACAGCGTGTGTGCACAGGGTCCTCCTGGAGTGCAGGGGCGTGATGGTAATCCGGGCGTGAACGGTATTCCTGGTACCCCGGGAATCCCCGGCCGTGACGGGGTGAAGGGCGAgaagggtgagtgtgtgatggagagattCGAGGAACCGTGGAAGCCGAACTACAAGCAGTGTGCGTGGAGCGCGCTTAACTACGGCATCGACCTCGGCAAGATCGCTGACTGCACGTTCACTAAGCTGCGTTCGGACAGCGCCCTGCGAGTGCTCTTCAGCGGCTCGCTCCGGCTCAAGTGTAAGACGGCCTGCTGCGGCCGCTGGTACTTCACCTTTAACGGCGCCGAGTGCACGGGGCCGTTACCCATCGAGTCCATTATCTACCTGGACCAGGGCAGTCCAGAGCTCAACTCCACCATCAACCTGCACCGCACGTCCACAGtGGAGGGCCTGTGTGAAGGCATCAGCGCTGGGCTAGTGGACGTGGGGATTTGGGTTGGGACCTGCGCTGATTACCCGCGCGGAGACGCTTCCACGGGCTGGAACTCCGTATCCAGGATGATCATCGAAGAGCTTCCCAAATAATCCTCTCATTCCGTCTGATCTGCTGTTAGCCGCTGATCTGTAATCAGAAGTACACGGCTAGCCAACATCCTCCATCGCTGTATTCCTCTAAAATCAAAATCAGTATGTTTTGTCAGTGTTATACACTGCTAGCGAGGTAACACTGCTGTTAGCTAAGATAACTAGTCACATTCAGTGCAATGATGTATTTACAGAGCTTGTCAGGGTAGTTAATGTTCCTACACACACTCGTgagactccacacagacagaagcctgagctcaggatccaTACAGGAGTCCTGGGGCTGTGAGGAGGCATCGCTGTCTACAGtgcaaacaataaacaacagaGTGTTTCTTACTGTCCAGAGAGAATTATAATCTCGAAAATATGGTAAACAaacttttttaatctgtttatatgccTGGTTACTCTCAAATATTTTAGAGCAGGGTGTGTCTCCAAGAGACTGGTGGGCGTGTCTTGAGCTGGAAGACACACCCACTAGACGTTTTGGAGTAGTTCCCAACTTCTTTTTCCTACTTGAAGACTTCCAGATGTGGACTCAgccaaacccacacacacacacacacacacacacacacaccctgctagTGTTTGAAGCGTGATTTATTTCCACTGTGTTTAGTTTGTATGTTAAACATGTTATCGTATTTTTTAATCGAATAAATGAGACTGTTTTATACACG

Function

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU398980 lncRNA upstream 74836 1965976 ~ 1984496 (+) False G336849
TU398979 lncRNA upstream 74836 1982429 ~ 1984496 (+) True G336849
TU398494 lncRNA upstream 216362 1842589 ~ 1842970 (+) True G336482
TU398493 lncRNA upstream 216796 1821132 ~ 1842536 (+) True G336481
TU398210 lncRNA upstream 301928 1756185 ~ 1757404 (+) True G336261
TU399155 lncRNA downstream 119982 2185892 ~ 2290807 (+) False LOC117595892
TU399154 lncRNA downstream 120663 2186573 ~ 2288884 (+) False LOC117595892
XR_004577080.1 lncRNA downstream 135870 2201780 ~ 2203741 (+) True LOC117595895
XR_004577082.1 lncRNA downstream 176275 2242185 ~ 2259536 (+) False LOC117595896
TU399175 lncRNA downstream 177583 2243493 ~ 2244230 (+) True G336991
XM_026946066.2 mRNA upstream 20285 2026407 ~ 2039047 (+) True mc5ra
XM_034298840.1 mRNA upstream 55998 1991814 ~ 2003334 (+) True rnmt
XM_026945978.2 mRNA upstream 126632 1920935 ~ 1932700 (+) False seh1l
XM_026945979.2 mRNA upstream 132060 1920936 ~ 1927272 (+) True seh1l
XM_034298499.1 mRNA upstream 132060 1920936 ~ 1927272 (+) False seh1l
XM_034298463.1 mRNA downstream 8973 2074883 ~ 2143022 (+) True rims2b
XM_026945946.2 mRNA downstream 90645 2156555 ~ 2163523 (+) True LOC113546187
XM_034298849.1 mRNA downstream 143882 2209792 ~ 2240423 (+) True LOC113546299
XM_034298843.1 mRNA downstream 194346 2260256 ~ 2351749 (+) True LOC117595892
XM_034298846.1 mRNA downstream 236235 2302145 ~ 2340261 (+) True LOC113546301
TU398943 other upstream 113466 1876274 ~ 1945866 (+) True G336822
TU398432 other upstream 399873 1657317 ~ 1659459 (+) True G336433
TU398302 other upstream 723802 1269809 ~ 1335530 (+) False G336334
TU398322 other upstream 731825 1325816 ~ 1327507 (+) True G336350
TU398245 other upstream 923225 1132988 ~ 1136107 (+) False mllt11
TU399169 other downstream 251115 2317025 ~ 2321417 (+) False LOC113546301
TU399163 other downstream 292206 2358116 ~ 2370076 (+) False LOC113546300
XR_004577078.1 other downstream 292218 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other downstream 292218 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other downstream 292218 2358128 ~ 2392375 (+) False LOC113546300

Expression Profile