RNA id: XM_034298635.1


Basic Information

Item Value
RNA id XM_034298635.1
length 1551
RNA type mRNA
GC content 0.49
exon number 11
gene id tecra
representative False

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 3965377 ~ 3976866 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGGGCACTCATGGCCCCGAGCCCTATGCTTCAGAATAGTCTTGACAACATCAGATCTTCTGCTGGGTTGGTCTGAGGTCTGCAATGTCACCCAGCTGGCCTATGGAGAAATGGAAGGTATATATTTAGCCTGGTGTGAGGCGTGTTGTGGATAACACGTCCTGAGGCTCTCGGGTTTCGTGTTCAGAGGGCTTTTTCAGGTCCTGGGGGACACTAGGAGGAACGTGGCAGCCCCCCGAAGTGTTAGAAGACAGGCGCCATTTTCCCTTTAGGATCACTTTGTGGGTGACCAGCATCCCAAACACACCTCCCAGTTTCAGTGCGGCATCTCGTCACTCTCCTTCTGCTCCAGCTGAAAAGAGCAGAGAGAGTAGCTCACGGGCAAACAAGTTGGAGAAGCTCCAAAACATCTTTTAGTTTTTCATAAATTGACTCAAGGAGGCCATAAAGAACTTAGAGGGGCTCTGAGTTACTCTCCTCGGGTCTTGCTGTGTTTGAGGAGGAGAGATAATGGATATCCTGGCTTTAGAGGCTAAGGGGGTCAAGGCTGAAGCGGCTCCATCGCCTGCCCCCTCTAAGCCCAGACCTAAAGCACCCAAAAAACCTAAACGAATCGTTTACTTCGAGGTGGAGATTCTGGACGCCAAGACCAAGGAGAAGCTGCTGCTCCTGGATAAGGTTGAACCATCTGCTACTATTTTGGACATAAAGTCAATGTTCCACAAATCAAATCAGCGCTGGTATCCTGCCAGACAGTCACTGTGCCTGGACCCGAAGGGAAAGCCTTTAAAGGATGAAGAAGTCCTTCAGCAGCTTCCGGTGGGAACCACAGCTACCTTCTACTTCAGGGACCTGGGAGCCCAGATCAGCTGGGGGACGGTGTTTCTGGTTGAGTGCGTCGGACCGCTCTTCATCTACCTGATGTTCTATTTCAGACTGCCCTTCATCTACGCCCCCAAGTATGAATTCACAACCAGCAAACACTGGGTCGTGCATATAGCGTGTCTGTGTCACTCCTTCCATTACGTCAAGAGGATTCTGGAAACGTTGTTCGTGCATCGCTTCTGCCACGGCACCATGCCGCTGCGCAACATTTTCAAGaatTGTCTATATTATTGGTGTTTTGCAGCCTGGATGGCCTACTACATAAACCATCCGCTTTACACACCACCATACTATGGTGAGCAGCAAGTGAATACGGCACTTGGGATTTTTCTGTTTTGCCAGTTGGGGAACTTCTCGATCCATGTCGTTCTGCGCAATCTCAAACCTCCTGGTTCTAAGACGAAGAAGATCCCATATCCAACCAAGAATCCTTTCACGTGGATCTTCACAGTGGTTTCTTGCCCAAATTACACCTATGAGAGACGTCTGAGTTTTGACCAGGCCACTACACGTTACTCACATTCTGGAAGCTTCAGTAAGAATATTAAATACGGATCATCACACAAACATCCCACTATACCACTCCCTTTACCCGTCAGTTTACTGAATTGTAGATTCACACATTGGTTTCCAGGAAACAGATTGAGAATGTGAAAACAGTCTTTT

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU399631 lncRNA upstream 7407 3943725 ~ 3959629 (+) False G337381
TU399647 lncRNA upstream 161416 3804152 ~ 3805620 (+) True G337389
TU399613 lncRNA upstream 187823 3775686 ~ 3779213 (+) True G337365
XR_003404699.2 lncRNA upstream 196010 3769585 ~ 3771026 (+) True LOC113546270
TU399637 lncRNA downstream 18998 3995255 ~ 4002612 (+) True G337381
TU399638 lncRNA downstream 18998 3995255 ~ 4043189 (+) False G337381
TU400439 lncRNA downstream 279300 4255557 ~ 4255899 (+) True G338057
TU400503 lncRNA downstream 291989 4268246 ~ 4268455 (+) True G338116
TU400553 lncRNA downstream 340293 4316550 ~ 4319101 (+) False rsad1
XM_026946051.2 mRNA upstream 37782 3825959 ~ 3929254 (+) True LOC113546282
XM_026945969.2 mRNA upstream 145734 3811626 ~ 3821302 (+) True qtrt1
XM_034298524.1 mRNA upstream 234872 3723189 ~ 3732164 (+) False tnfsf18
XM_034298498.1 mRNA downstream 63562 4039819 ~ 4048530 (+) True crb3a
XM_026946014.2 mRNA downstream 85249 4061506 ~ 4067944 (+) True LOC113546255
XM_026946086.2 mRNA downstream 287582 4263839 ~ 4268179 (+) True zgc:103625
XM_034298715.1 mRNA downstream 331665 4307922 ~ 4325036 (+) True rsad1
XM_026945927.2 mRNA downstream 353911 4330168 ~ 4352491 (+) True epn3a
XR_004577078.1 other upstream 1574558 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 1574564 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 1574661 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 1596960 2358116 ~ 2370076 (+) False LOC113546300
TU399169 other upstream 1645619 2317025 ~ 2321417 (+) False LOC113546301
TU400576 other downstream 376265 4352522 ~ 4355029 (+) True G338163
TU401842 other downstream 2363250 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 2628400 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 2734758 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 4306703 8282960 ~ 8285204 (+) True G340208

Expression Profile