RNA id: XM_026946102.2


Basic Information

Item Value
RNA id XM_026946102.2
length 8615
RNA type mRNA
GC content 0.54
exon number 26
gene id tanc2a
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 2845407 ~ 2890143 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGTGGTTTTCTCGcagctcgctctctctctttctcgctctacCCTTTGTGGGCTCTGGAGTCCAGGGCCTGCAGACTACCCGCGATTCTTGTTGAAGTCTGAGCCAGCGGTTTTCTCTCTGGGGCCAGCTCGCTCTCGAAAGTGCCTCCTCCTCCCAGAAGGCCAAAGGGAGCAGAGCGTGGACGAGCCAGCTCATTCTCCTCGGTGCTCTCTCCGGCTCTGCgctggaagaggaggaggagacggAGTATTGGAGCGATGGACGTGAGGAAGGTGTGCACTCGGAGCGCATGGCTGAGGAGGAAGAGGCCTCGGCCATACGAGCGGACCAggttctcctcctcctcctcttccctgCTGCGGCGCTGGATGTCTCGGCTATGCTGCGCGTCTCGGGCCTGTTCCTCCAGCCTCAGCGCTTCGGATCAGTCACTCCTGCAGCCAAGCTGCTGCACCAGGCCGAGAGGAGCTCAAGGAATGGTGGGAGACGCTGGAGACAGCGGGACAAAGGAGTACCAGCAGGAAGAGTGGGAGCAAGCGGGAGAGGACCAGGATGAGGAAGTGGCAGAGGAAGACAACGACGACAACGATGGTGACCGTGATGACGATAACAATAACGAAGATGCCaatgattatgaaaatgaagaggaagatgatgaagaagttgatgtggatgtggatgtggatgagTGTGAACCAAAAGACGAAGAAGAAAGAGgagaagACAATCAGGATCTGGGTCCCCCTCCGTCAGTGGACGAGGCTGCTAATACCCTGATGACGCGACTCGGGTTCCTGCTTGGGGACAAAATGGCCGAGGGGTCCGACAGAGCTGCATACGGCTTTGAGGAACCAGAAGAAAGTCagGCTGTCTCCATGACTCAGAGAATCAGTCCATGTTCCAGCCTGGCCAGCAGCTCAGCGTCTCCCCCTCCTGGCAGCCCCTGCTCCACCCTTCCCGCTGGTGGTCCGGGCAGCGCCGGTGCCTACGGCTCCATCACGAGCCCCACCTCCACGCTGGAGAGCAGAGACAGTGGCATCATCGCCACACTGACTAGTTACTCGGAGAATGCGGATCGGGGCGGGAAGCACAGCGATGGCTCACGCCTCAAACTGCGGCAGACAGGGAAATCTTCAGGCGGCGACTCCTTCCTGTACCGCGTGGACGAGAACATGGCCGCCTCCACATACAGCCTCAACAAAATCCCAGAGAGAAGCCTAGAGCACTCCGCCTCCCACTCCGCCCACTCCATCCCCCTCTACCTCATGCCCCGCCCAAACTCTGTGGCCGCTACGAGTTCTGCTCACCTGGAGGACTTGGCGTACCTGGATGAGCAGCGCCAGGCTCCGTTGCGGACGTCCCTGCGAATGCCACGCCAGAACTCCGGCGCCGGACGATCCGGGAATGACctaagagTGCGGTTCGCACCGTACCGCGCACCGGACATCGCCCTGAAGCCGCTGCTGTTCGAGGTGCCGAGTGTGACGCCTGACTCTGTGTTTACGGGACGGGAGTGGCTGTTCCAGGAAGTGGACGCTCAGCTGCGCAGCGGTGAAGCCACCAGTCGGGGCGTGGTCATCGTGGGCAACGTGGGTTTCGGCAAAACCGCCATCATCTCACGACTGGTGGCTCTGAGCTGCCACGGCAACCGCATGAGACAGATCGCCTCAGAGAGTCCGCACGCCTCGCCCaaacatGGAGACACACTGCCCCTCAGTCAGCCCCAGTCGGCTCATGGGACGCTGGTTGGAGGCAGCAGTTGCCCCGGGACACCTGAGATGAGGAGACGGCAGGAGGAGGCGCTCAGGAGACTCGCATCTCAGgtggtgGCGTATCACTACTGCCAGGCGGATAACGCCTACACGTGTCTGGTGCCGGAGTTTGTACACAACATTGCGGCGTTGCTGTGTCGAGCTCCTCAGCTGCAGGCGTACAGAGAGCTGCTGCTGCGACAGCCGCACCTACAGAGCCTGCTCAGCCTGCGCTCCTGCGTCCAGGAACCAATCACGGCCTTCAGCCGCGGCCTGCTCGAACCGCTGCACGCGCTGCACAGGgAGCGTAAGGTGGCATGCGACGAAGATCTGATCATCCTGATTGACGGCCTGAACGAAGCCGAGTTCCACAAACCGGATTACGGCGACACGATCGTGTCCTTCCTGTGTAAAACCATCGAGCGTTTCCCTCCATGGCTCAAACTGGTGGTGACGGTCAGGACCTCGCTACAGGATGTCACTCGGCCGCTGCCGTTCCACCGGATATCTCTGGACCGTCTGGATGAGAGCGACGCCATCGACTCGGACCTGCAGGGTTACATCCTGCACCGCCTGCACTCCAGCCAGGAGATCCAGAACAATGTGGCACTGAACGGGAAGCTGGACAACGCCGCCTTCGCCAAACTCAGCGCTCACCTGAAAGGCCTGAGCCGCGGCTCGTACCTGTACCTGAAGCTCACGCTCGACCTGATTGAAAAGGGCTACCTGGTCCTAAAGAGCTCCAGCTACAAGgtGGTGCCGGTGAGCCTGGCCGAGGTgtacctgctgctgctgaacaTGCGTTTCCCCACGCAGTCATCGTTTGAGCGAGTGCTGCCGCTGCTCAACGTGGCCGTGGCGTCTCTGCACCCGCTGACGGACGAGCAGGCGCTGGGGGCGGTGAACGCTGGGGTCGTACGTGGCATGGCGCTCCACTGGGACGACTTCCAGCAGCGTGAGCTCCTCGCACCCTTCCTCATGAAGAGGAGAGACGGCACGCGCATGTTTGTCCACGCCTCCTTCAGAGAGTGGCTCATCTGgagagaggatggagagaagACCAAGTTCCTCTGTGACcccaggagtggtCACACACTGCTGGCCTTCTGGTTCTCGCGGCAGGAGGGCAAACTGAACCGACAGCAAACCATCGAGCTCGGCCACCACATTCTCAAAGCACACATCTTcaaggGTCTGAGTAAGAAGGTCGGGGTTTCCTCGTCTGTCCTGCAGGGGCTGTGGGTGTCGTACAGTACAGAGGGTCTGTCTGCTGCCCTCGCATCCCTGCGCAACCTCTACACCCCCAACATCAAGGTCTCTCGTCTGCTCATTCTGGGCGGAGCCAACGTGAACTACCGTACGGAGGTGTTGAACAACGCTccggtgctgtgtgtgtatgcacaccTGGGTTATATGGAGATGGTGACGCTGTTGCTGGAGTTTGGCGCTGATGTGAACGGAGCATCGGAGAGCGGCCTCACACCGCTGGGCTACGCAGCCGCCGGcggtcacctgaccatcatcaCCACCCTCTGTGCCAAAAACGCAAAGgtggaCCACGTGGACAGGAACGGTCAGTGTCCTCTGGTGCACGCGGCTCTGAGAGGACACCTGGAGGTGGTGAAGTTCCTGCTGGAGTGTGAGTGGAGTGCTGAGGCAGCTTTCAGCAAAACACACGCTGTACAGCAGGCCCTTATAGCAGCAGCTAGCATGGGCtatactgagattGCGTTGTACCTGCTGGACCTTCCAGAGAAGgacgaggatgaggaggagCGCCCTCACATCAACAGCTTCGACACGCTGTGGGgggaaacagCTCTGACTGCAGCAGCAGGCAGAGGGAAGTTGGATGTGTGTAGGTTGTTGTTGGAGCAGGGAGCCGCCGTCTCTCAGCCTAACCGCCGCGGCCGCATTGTGCCGCTGTTCAGTGCTGTCCGTCAGGGCCACTGGcagattgtGGAGCTTCTTCAGAATCACGGCGCTGATGTGAACATGGCGGATAAACAGGGCCGCACTCCTCTAATGGTGGCCGCGTCTGAGGGTCATCTGGCCACGGCAGAGTTCCTGCTGGAgcaggGTGCATCATTGGCCCTGATGGATAAGGAGGGGCTCACGGCTCTGAGCTGGGCGTGTCTGAAAGGCCACCTCCCATTGGTCCGTGCGTTGGTGGAGAGAGGAGCGGCGACGGCTCATGCTGACAAGAGCGGCCGCACGCCGCTGGACCTCGCTGCCTTCTACGGAGATTCAGAAGTGGTACAGTTCCTGGTGGAGCACGGCGCCATGATCGAGCATGTGGACTACAGTGGCATGAGGCCTCTGGACAGAGCCGTGGGCTGCAGGAACACATCGGTGGTGGTAGCCCTGCTGAAGAAGGGTGCCAAGATAgGTCCAGCAACGTGGGCCATGGCCACCTCCAAGCCAGACATCATGATTGTCCTCCTGAGCAAGCTGATTGAGGAAGGAGATGGATTCTACAAGAAGGGAAAGGTGAAGGAAGCAGCCCAGCGCTATCAGTATGCCCTGAAGAAGTTCCCTCGCGAAGGTTTCACTGAGGATTTGAAGAGTTTCCGTGAGCTTAAAGTCTCCCTGCTCCTCAACTTGTCCCGTTGCCGCCGCAAAATGAACGACTTTGGCATGGCGGAGGAGTTTGCCTCCAGAGCTCTAGAGTTGAAACCCAAATCCTATGAGGCCTTTTACGCACGAGCCCGCGCCAAACGCAGCAGCAGGCAATTCCACGCAGCCCTGGAGGACCTGAGTGAAGCCATACGCCTGTGTCCCAATAACCGCGAGATCCAGCGTCTGCTGCAGCGTGTGGAGGAGGAGTGTCGCCAAGTCGCTCAGCAACAGCAGCTGGATCCACCTCCTTCCCCTCCCCATGAGCAAGCCCCTCATCCTCCTCCGCTGGAGCCCCGCCTGTCTGACATGGAGCCAGTGCAGGACCTGTTTGAAGAGGACGAAGATTACCTGGAGCGGGATTTGGATGGTCTTCCACTAGCTGTGACTGCCGAGCCTCGTTCCAGTCCTTCAGGTCTGCCTGTCATTCAGAACATGCCACCTTCCCCAAGCCATTTACCCTACCTTTCCGGAAGCGCTTCCATGGGCCAGGCTTATGATCTGCGGCCCAGTCCTCCTTCCATGTCCTCTCCGACTCGCCAGGGTTACCAGTCCACCTCTCCGTCGCTCTCTCCAACTCACCAGACCTCCCACTATCGTCCAAGCCCTCCTCACACCTCTCCGGCCCATCAagcttcctcttcttcctcctcctcatcctacCACTTCAGCCCCCCTCCCTCGCCTTTACGCCGTGGAGCCTACACCTCAGAGAATGCAGCCATCTACAGACCACAGTCTGcctctgtcagctcaaaccgcTATCAACAAGAGGGACTTTCTGGCAGGCCCAAATCGCCGCTGGCTAAAATGGGCAGCCAGCGCTCACTGCAGCAGCAAACCCAGTGGCTGCAGCCAGCCAAGGCCCAGATCATCCGCACAAATCAGACCAGTGCCTCGGTCCACTCCAGCGCTTACTCTCATGTGGCCCAGTCCATGAGAGGACATGTTCCTGGGGATGTCGACGAGCTTGGGGAGGTAGCCTATTCAAGCCCACTGCAGATACAGGGCAGTGTGTACATAGAAGAGGAGCTCCCTCAGAGGCCCTCACATGCATACAGGCCCAGCATCACAGGCCCCCGTTATGGTCAAATGGCACCACAGATCAGCCGCAGCCAGTCAGCTGCTTATTATCCCGTCCAGCCACATGAAATTGAGCGCCAACCTCAGTTATCATCACCTGAGCACCCTCACGGTCTCCGGCGCCCACTAAGTGCCACTGGCCCTACACCACGGCCGCTCATCCACTCTCAGAGCACTGGCCTGCGCTTCTCACCTTCTAGCAGCAGTCTGGCAGCAGGATCCACCTCTAATTTAGGTCCAGGCTTCAGGCCCTCGGCTTCAGCACAACAAATGGAAATCCCACTGAAGCTGGCATATGAGGGTGGATACAGCGATGACCTGTCACCAGTTTCTCCACCACAAGGCACTGACATGCGACTTTTAGGGGGGACTTACCCAGGTGAGGCTATGCGGGCACGCAGCACGCCCTTCATGGGCATCATAGACAAGACAGCACGGACTCAGCAGTTTCTTCAGCAACCttcatcatcttcctcttcatcaCGCACTTGGGCTGTGTCATCTTTAGATACTGTGGTCTCCAGCCCTGCCACATCACCTGGCAACATGACCTATGGGCACCTTGCCTACTACAATCGCACCAACAATGCCCACAACGGACACCTAGTGGAGGATGACTACTATCGGCCAGATAACACAGGCCGGGTGAGTCAGGCACCCACATACCCAGACGTTAAGGTGGCGAGAACGCTGCCGGTCTCGCAGGCCTATCAGGACAGCGACTACAGACAGGCGGGACATGGGGAGCGCCAAGGTCCTTCCTCTCCTATCAAACCAAAGAGGCCCTTTGTTGAGTCCAACGTTTGAGGCACAAATTGTAGATATGTACTAGGACTCACATGGTTTCCCCCTCACTTTGATGTAATCCGATCTTAAAACTGAATATATGGACCTGAAAGGAGATGTTGTAGAAAGCATCTGCTTTGGGATCAGGACATGCAGGATACTTCAGGAGCCTCAGTTGGAGTGGACCGCCATAACTGCTGTATGCTAGCTAGGGATGCGGCAATATGGGATATTAGTATCAGTCATACAGATAGTCTGACCACATGTGGCTTTCAGAAAAGGGACATTTCATCAGTAGTGACCTTAAGCTTTGTTATTTAGATGGACAGTAGTACTACAGAGCATAAAGCATCCAATATGCAGGACTTGTGCAAGCACATCTGGTGATTTAACTATAAAATTTCATTGATATAAATTGCTTACATTTGTAGGAAATGGTGGAACAGAGCTTCTCAACAGTCAGTACTTACACCTGACACACCAAGCTATCTGATGTCCTTAGTTTTTACTGCATTTCCCACATAGTTAACGCTAGTTGACTGATTAAATTCCTCAGCATACTTCATGGAGAAGCAACATTTGGCTGGCTTCTACaaaaaatatagatagatagactttattgatcccatgagggaaattttTGAAAAGCGGTCTTCTCACAGTGTGTCATGGGACATCCAGGCTCTGTCTTCTTAATGTAAATCTTTTTCACTATAGACGCAATGCAAAACCTCGACTCTGGtgggactcgaacccacaacctttgaATCACTCCACTAAGTGCCACTTAGAAGTCCAATGCGCTATCCATTGCGCCACAGAGCCACATATTTGGCACACAGAGCCAAATATGACGTAATTGCACACAGcatgtgtgttcactgtgtcgTGCACATGGCAGCTAGGCAAACTGCAAACACGAACACACTATGCTCACTACAAACTAATTCATCACAAGATGGATGACATTGAAGGACGGTAATCTTTTTCCTGTAGTCAGAAATCACTAAGAAATTTTAATAGCTCCACCTGCAGTACTGGGGCACTTGAAAAATCGCAGACTATGCGAGCTTGTAAGCAGGCTTTACGCAAACGTCACAGACGCCATCACCAAAATTATGTATGCTGTGGTCTTAAGTGTTGAATAGTGGTCGGAAAGCCAGAGAAAGCTGTTTGATTGGCTGTTCAGCTGAGCAAATTGTTAAAGGGAAAGAAACACCAAATCAAGCAAAGCAAGTCCTGCTTAACATTTTTTATCTGCTCTACCCACTTGTTTGCACCAAAGAAACAAAGCAAGATCATTTAAAGTGGTTtcaaatgatgtgaaaatgatAGCTAGGCTAGTTTGCTTGGTTAAAATTCATACTCCTGCACTAAATACCATAATGTGTCATGACAGTATAGGTACTTATTCTGGTACAAGATAGGTGGAATACCAGGCTTTGTCTTTTTAGCAATTCTGGCTCTTCtggctttatttaaattttgaatttgaatatagACTATTGCCCCCTGCTGGTAAGAAAAGTTATTTTGGCTGTTCAAGTGTGTTTGCTAGTTTTTTGACATTGGCTTGGTATGTCAGGGTCCTAAGTCTGAATGTTTTACAAGGCGTTAGTTATGCCTCCTGCCTACATAATGCATTACAACATTTTGACACTGTGTTGAGTGCACAGTATGTCTGAAATCTTGCACCCGAAGAGATCAGTCTGAATTTTGTTCCCCTCCTACCTCTAGGGGAATTGTTTGAATTGAACCATTGTGTTGCCAGGCTCTGTCCTTGATCTGAAGCTTTCCTGAAGCCTCTTCTGTATATATGGCTGTAAAAGGTGATCCCAAATCAATGTGTACATAGCTAAAGTAATGACAGAAAATACGGAATATTTATCAGTTTAAGTTATGTTtgtacaaaattatatatatacacatatacatactttattttgctcttgGTGCCATTGTGCTCCGCTTTCCTGCTTCTGGTAGGTCAGTAATGTGAAATTTTTTACCTGCTTTAAGGGCAATTTTGGTTTCATGGAAATGTATCCTTGATCATTTAAAATGCTGTGCTGTGGTTTGCGGATGTAAGGAGGTGCTGCAACATTCACGAGTATAATCTCAAACATCATCTCGCGTCATGTTCACATTTATGAAGGCAACAGAACGTTATTAGTGTGTGACAGATTTTTATTTGGGAGAGGATAAGGTCGTTGAGGCTTCTTTTCAATTTTAGACACTTTTCCAGATGACTTACATAattttacacactttcacaAAAGGTTATTAATTCTCTTACATTGTATTTATTTCCttgtttcttaatttttttaaccatttggaGTGGCTTCCATTAAACACCTGATTATGCTGTGTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU399353 lncRNA upstream 2532 2842664 ~ 2842875 (+) True G337129
TU399352 lncRNA upstream 2952 2841356 ~ 2842455 (+) True G337128
TU399351 lncRNA upstream 10851 2834271 ~ 2834556 (+) True G337127
TU399350 lncRNA upstream 11348 2833588 ~ 2834059 (+) True G337126
TU399343 lncRNA upstream 23877 2821090 ~ 2821530 (+) True G337119
XR_003404701.2 lncRNA downstream 36381 2926524 ~ 2995271 (+) True LOC113546290
TU399423 lncRNA downstream 128967 3019110 ~ 3019410 (+) True G337194
TU399424 lncRNA downstream 143701 3033844 ~ 3034394 (+) True G337195
TU399433 lncRNA downstream 205854 3095997 ~ 3102191 (+) True G337197
TU399479 lncRNA downstream 322368 3212511 ~ 3299308 (+) True G337233
XM_026946022.2 mRNA upstream 103813 2671258 ~ 2741594 (+) True wnk4b
XM_034298394.1 mRNA upstream 185129 2607346 ~ 2660278 (+) True arhgap27l
XM_034298751.1 mRNA downstream 105134 2995277 ~ 3023586 (+) True hdac5
XM_034298756.1 mRNA downstream 141505 3031648 ~ 3039255 (+) True lsm12a
XM_034298407.1 mRNA downstream 151225 3041368 ~ 3067972 (+) True vwa3a
XM_034298408.1 mRNA downstream 151225 3041368 ~ 3067972 (+) False vwa3a
XM_034298410.1 mRNA downstream 151225 3041368 ~ 3063913 (+) False vwa3a
XR_004577078.1 other upstream 452929 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 452935 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 453032 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 475331 2358116 ~ 2370076 (+) False LOC113546300
TU399169 other upstream 523990 2317025 ~ 2321417 (+) False LOC113546301
TU400576 other downstream 1462379 4352522 ~ 4355029 (+) True G338163
TU401842 other downstream 3449364 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 3714514 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 3820872 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 5392817 8282960 ~ 8285204 (+) True G340208

Expression Profile