RNA id: XM_034298350.1


Basic Information

Item Value
RNA id XM_034298350.1
length 1596
RNA type mRNA
GC content 0.54
exon number 8
gene id gabpb2a
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 1137077 ~ 1147087 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ccctatctagtgcactagaCTCGTAAACTCGgctgatttgggacacagcatGAGAAAGTGTTTGTTGGGGAAGCGACTAGCTAAAAGTAGACAAAAGTTGAGTTAAAGTGAGAAAACGGGCGCGTGAAGCGGAAAAGGAGTaTGTCTCTGGTGGATTTGGGGAAGCGGCTTTTAGAGGCTGCGCGTAACGGTGAGGATGAAGAAGTGAGGAAGCTGATGGCCAACGGCGCCCCCTTCACCACAGACTggTTGGGAGCGTCTCCGTTGCACTTGGCGGCGCAGTACGGTCATCGCTCCACGGCCGAGGTGCTGCTGAGAGCCGGCATCTGTAAGGACGCCCGCACCAAAGTGGACAGGACCCCGCTGCACATGGCCGCCACGGAGGGCCACGAGCTCATCGTCGACTTACTGATCAGGAACGGCGCGGACGTGAACGCTAAAGACATGCTGAAGATGACGGCGCTGCACTGGGCCACTCAGCACGGACACCACAGCGTCGCTCAGCTGCTCATCAAACACGGCGCCGACGTTCACGCACTCAGCAAGTTCGACAAGTCGCCCTTCGACATCGCCCTCGACATCCAGCACGTAGAACTCGCCAATCTCCTGCAGgaggggATGCAGAAGCAGGTGAACAGGAATGCAGAGTCGTCCATCGCACCACAGTTCATCATTCAGGGAGGAGTAATTAACATCGCCGAGCTCGTTAAACCCAACGCAGgtAACAGTGAGGACGCCGTCGCCGTCAGCGCTCTGGACCAACAGGTGATGAGTGACGGTGGACAGAGGGTGGTTACCATAGTAACAGATCAGCAAGGGCACCTACAGACGAGACTCACACAGCCGCTGTACGTCACGATGCAGAACGGACGGCAAGtgttggCCGTTCCCTCCGGTCAGTTCACACAGGAGTCAGTGGATGAAGAAGCTGAACCTCCCGTACGACGAAGGAAAATCGAAGTCGTCTCTGCTAATCACATCGACACCAGAGACACGGAGCAGCTGCAGCGGCGTCTGGCCGAGGCCAACATGGCGGCCCAGTTGTACCGACAGCAGCTGCTGCAGAAGGAGCAGGAGGCGGAGGAGTACCGCATGCAGCTGGAGGCCATCACGGAGCGCGTGATCACGCAGGAGGGCGAGTGTGTGGAGGAGAAGCAGGAGGACGCCGAGGAGGAGGTGGTGCTGCTGGCTGACGGAGACGTGATGCTCAACACAGAGGAGATCGACTCCACGGCCGACATCTCGTAACGCCTCGCCTCACGGACTCGCACGTTTACGTCcctgcgcgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtggagcttttttttgtttttttttttttcagctttagaTCAAGAAGAACAAAAACTTCTACAAATACAAGTTTATAAGTGAAATAAACTCTACtcttttccttcctgttttttAATAACTTGTCTTCTGCTTTAGTAAAATGATCCGTGTTTACCGTCTGCCTGagaaaatgctgtttgtgtttttttaaataccagaAAAATTTTAAGTTGACTCTTATAATACACCAATTGTGAGCAGTTTCTAAA

Function

GO: NA

KEGG:

id description
K09454 GABPB; GA-binding protein transcription factor, beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU398246 lncRNA upstream 970 1132988 ~ 1136107 (+) False mllt11
TU398184 lncRNA upstream 9668 1028056 ~ 1127409 (+) True G336246
TU398244 lncRNA upstream 13504 1122267 ~ 1123573 (+) True G336295
TU398148 lncRNA upstream 72922 1020239 ~ 1064155 (+) True G336214
TU398178 lncRNA upstream 120446 1015972 ~ 1016631 (+) True G336243
TU398180 lncRNA downstream 2929 1150016 ~ 1152914 (+) False G336245
TU398253 lncRNA downstream 12568 1159655 ~ 1159970 (+) True G336302
TU398269 lncRNA downstream 36481 1183568 ~ 1187725 (+) True G336313
TU398271 lncRNA downstream 37196 1184283 ~ 1187725 (+) False G336313
TU398277 lncRNA downstream 45600 1192687 ~ 1193174 (+) True G336319
XM_034298623.1 mRNA upstream 953 1132955 ~ 1136124 (+) True mllt11
XM_034298360.1 mRNA upstream 33998 1080994 ~ 1103079 (+) True LOC113529037
XM_034298747.1 mRNA upstream 60531 1065767 ~ 1076546 (+) True LOC113529039
XM_034298748.1 mRNA upstream 60531 1065767 ~ 1076546 (+) False LOC113529039
XM_034298745.1 mRNA upstream 74062 1038966 ~ 1063015 (+) True kpnb1
XM_026918362.2 mRNA downstream 13646 1160733 ~ 1169288 (+) True rab25a
XM_034298619.1 mRNA downstream 210923 1358010 ~ 1376292 (+) True fbxl20
XM_034298680.1 mRNA downstream 232566 1379653 ~ 1387764 (+) True LOC113546245
XM_034298682.1 mRNA downstream 232566 1379653 ~ 1387764 (+) False LOC113546245
XM_034298681.1 mRNA downstream 232566 1379653 ~ 1387764 (+) False LOC113546245
TU398245 other upstream 970 1132988 ~ 1136107 (+) False mllt11
TU398147 other upstream 160756 973669 ~ 976321 (+) True G336213
TU398091 other upstream 342382 794117 ~ 794695 (+) True G336172
TU398067 other upstream 387403 739369 ~ 749674 (+) True G336161
TU397921 other upstream 849862 286849 ~ 287215 (+) True G336034
TU398302 other downstream 122722 1269809 ~ 1335530 (+) False G336334
TU398322 other downstream 178729 1325816 ~ 1327507 (+) True G336350
TU398432 other downstream 510230 1657317 ~ 1659459 (+) True G336433
TU398943 other downstream 729187 1876274 ~ 1945866 (+) True G336822
TU399169 other downstream 1169938 2317025 ~ 2321417 (+) False LOC113546301

Expression Profile