RNA id: XM_034298407.1


Basic Information

Item Value
RNA id XM_034298407.1
length 3928
RNA type mRNA
GC content 0.53
exon number 34
gene id vwa3a
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 3041368 ~ 3067972 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACCGCGCGTGCACACACAGGCCTGCAGCTTGGCTTACTTCCGGATATTTTTCCGTCCTAAACTTCTTACTTCTTACAGCATTAAATCATTACACGACAAACAGGAAATCCTTCtcaaatatatatctatatacttatatatttccCTCAGAAACTCCTGAACTGCTTTTAtattcatcttcttcatctttatatttatattcactctcagaaatacagCTCCCTCTTGTCTGCTTCTGTCTCGCTCCTGCAGTCACATGGAGGAGAGCGATGAGCTTTTCAGGTCCTCCAAAAATACCCATAATGCCTCACAGAGTGAAGGACTCTCACCCAGCAAATACACCCAAACCTGGACCTTAAAGGCGTTACTGCAGGAGCAGAGAGACGATGCAGACGAGCGGGAAACATCCGAGGAGTGGCTCGAGTGGAGGAGCTTGGAGAGTTGTGGCCTCACTCTCTCCCACCTCCTCTCTCACTGCTCCACTGCTGCTCTATCTCACAGAGAGGACGGGGTGGACGCACAGCTGGAGATCGACTCCGAGTCTCTCGCTGACTTCGAGATGCAGCTTTACCAAGCGATTGAGATGTACCACAGCAGAATACAGTGGCTGACTCGAGGCAGCAGAAAGATCTTTGGGATGGTGACAGGATCCAGACTTGGGGTTCTCATCGACTCTTCTGACGTGAGCTGCTCTGAAGAGAGGCTCTCAGATCTCCAGCGCCACCTCCTGTGTCTCGTACAGGAGCAATTATGCCTGAAGAAGCAGCTGCACTTCCTGTCCATAGGCACAGAAGTCAGCAGTCTGTGGGAGAAACCGAGAGACGTTAACCcgaagagGCTGCAGGAGGTTCAGGAGTGGATCCTACGTCTGCGTCCGAGCGGAGAGTGCAACCTGCTGCAGGCTTTAGAGAAAACCCGGAGCCACGCCCATCTCGACGGTCTGCTCATCATCCTGAGCTCCTGTCCTGATCAGGACGTGGATATTTTACTCTCCTACGTGTCTGAGGTGGTACAGGAGATGTCGCTCTCTGTTCACGTGGTGTCCTTCGACTCCTGCAGTCCAGCAGCTGTTGCAGCTGTAAAGAACATCAGTAAAGTCTCAGGAGGGAGATTTCACCTGTATTCTGCTGCACTGggtgttgTGGACAGCAGTAGTGACTTGGAGCCTCTGTGGGCTGAAATTAAAGCCGCGAGAGACGTTCTTCACCACGTTCAGGACGTGCGGCGGTGTGGGCGACTTAACGACACGGCGGTGTCCATCGTTTCAGAGATCTCGACAGATTTGGACGGTCTGACTCTGTCTGATCTGAACTCTGAAGCCCACACCGCTGCCCGcagtgctgctctgtgtgtccAGCCTGCAGGTCCTCTCCCATCCACCTCTGCTGAGTGGCTGAAAACACACGGCCTGAAAGCCAAGAAACTGAACTTGTACCAAGTGCTGGCTCCTAACGTCTACTCTCCACTGGAGGGCTTCGTCCCCATACTGGGGAAGAACGTCCAGTCAAAAGTGCACGAGAAAGCAATGGTACAGTTTGAGTGGAATGACGGCACGGTGAAGAACATGCACGTGGATCTGCACCTGCTGCAGAGTTATCAGaggcGGCTCCTGGAGGccgagtgtgtgatggaggacAGGGTCATGTGGTTAAACGATACCAGCAGCAGGCAGAtctggggaacagtgtgtgaacaGAGCGTGCAGGTTCTGCTGGAGATGTCCGACATGAGCGTTCACCACCAGCTGCACATCCAGCACGCCGTCCGACTCCTGCTGCAGGAGCAGCTGCCCAACACACACCGCTTCAACATCATAGCGTTTGGGTCAGATGTGAAAGCGTGGAGAGAGCAAACGGTTTCCTCTAACCATCAAAACCTTCAGGATGTCTGGCAgtgggttCAGGAATTAGAGTGTGCAGGGGGTCGTAACACACTGGCTGCTCTCAGACACGTTGTGGAGACAGAACCACACACCGATTCCTCTCTCACTCACGGAGTGTATCTTCTCACCACAGGCACTCCGGATCAGGACAGCTTGGCCATCTCTTCATACGTGTCCGAGTTCTGCACTGGTCTGCGGATTCACGTGTGCCTGTTCACCAGAGAGGACGAGCCGCTCCGATGCTCATCGTCCCGCTACGTGTCCCGCGCCGAAGTCGCTCTGTTTCTGCGCAACCTAGCACACAGCGCTAACGGCCGCTTCCACTGGATCACAGACACAGGTATAGTGGAGAGCGATGACATCACTGCCCTAATCAGAGAAATGGAGAAGGCTGCTGATTACTGGCAGAAGTGCTGTGAGCTGGTGGACTCTGTGCTTCAGCGGAGCTCCAGCGCACATCCAGAGGAGGCTCATGATCGAGAGTGTCGTAGCCCAGCTCGGTGCGCTAAGACTCGGacgcagaaacacacacttccccttCCCAGACAAACTCGACTGAGCTCGGCCAGGCTGGGGAGGACGGAGGGGAAGCGCTCAGCAACATGGAGGCCAAACAGTGCCAAAGCAGTCATTCCTCCTGcacgtCCACTGGATGGTTGGGAACCGGTCAGGCTTGCAAACTCTGCTAAAGTGAAGAAGAAGCAAAGAATCTCCTGCTCTGCTCTGGACTCGGAGGAAGACAGCCCGGGTTCAGTTTTTAAGCATCTGAAAGCAAACATCGCTCAGAAGTGCATTAATATCCCTAAACACGAGGACATCTCCTCCTCCAAACAGTGGCTGAAACGGTTTGGCGTCAGGAGTCTGAAACTGGACCTCCACAAGCTGCTGTCGGTTCCTGCGTGCACCCACCGTAAGGAGCTCGTACCGTCCGTCAGCAGGAGCGTGTCAGCAAAATACTGCACCATCTTTCCCAGCGTGCACCTAAACGGACGAGTGCGGCATCTGTTCCTGAGTTCGGGCGAGTTGAAGCAGTACCTGAACAAGACTGAACGGCTTCTACAGCGTTACGCTCGCAGGATGCAGTGGCTGCTCTCAGGCAGCAGACGTGTGTTCGGCTGCGTGTTGGAGAGAGACGTGTGTGTCGTCCTGGACGTGTCGGGCTCCATGTCGCCCTGCCTCGCCCAGCTGCACAGAGAGCTCACCTCACTGATCTGGGATCAGCTGCACGCCAACAGAGTGAGatttaGCATGGTGGCATTCTCTGAAGAGGTGCGGGTGTGGCAGGAGGAGCTGGTGGAGGCCTCAGAGGAGAGGTGCAGGGATGCAGTAACATGGCTGGGACAGCTTAACACACACGGCGGAACCTCCATCCTACACGCACTgcagGCagcgtgtgtgtttggtgaCTCGGTTGGTGTGTATCTGATCAGCGACGGTCGGTGGGACTGTAGCTGCAGTCTGGTGCTGAAGGAGGCCGAGAGACTGACGTCAGGAAAACACATCACCATCCACACGGTCACACTGAGCGGCCTGGACAGcaCAGCCGTGGTCCTGAAGAGCCTGGCCCATAAAACTGGAGGCCGCTTCCACCAGGTACCTTCAGCTGCAGACACGGCCGCGGCTAGAGAGCTCCTGAGCAGCGGGTTCGGTGCTGGAGAGGACTCGGTTCTCCCGGAGTTTCATGGTGATGATCTGAAGAGGCTGAGGAATGAGATCGAAAAGTTGAGAATGTTCCAGAAACAAGCCAAAGACTTCAgGGAAATTTTATTGGTGAAGAATCCAGAAGTCAGCGATCCGAAGTAAACGAATCAAGATCCACCgaagcatttcattttttttttttgggctgatATAAAATCATGATCCtctgttaaataataaagtggtgtgtttCCCGTACACTGCTGTGggcattaaaaataacaatacagCTTTTTTAACATACTGGCTTTTGTGCAAATGTCTAATATATACACTCAGATCAAAGGCTATCCAAGACACAGGAACATGTTTCTGAATCTTACTTAAAATCTTCTCAAGTTTCT

Function

GO: NA

KEGG:

id description
K24509 VWA3; von Willebrand factor A domain-containing protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU399424 lncRNA upstream 6974 3033844 ~ 3034394 (+) True G337195
TU399423 lncRNA upstream 21958 3019110 ~ 3019410 (+) True G337194
XR_003404701.2 lncRNA upstream 46097 2926524 ~ 2995271 (+) True LOC113546290
TU399362 lncRNA upstream 170459 2870683 ~ 2870909 (+) True G337138
TU399360 lncRNA upstream 178400 2862527 ~ 2862968 (+) True G337136
TU399433 lncRNA downstream 28025 3095997 ~ 3102191 (+) True G337197
TU399479 lncRNA downstream 144539 3212511 ~ 3299308 (+) True G337233
TU399552 lncRNA downstream 421881 3489853 ~ 3491029 (+) True G337304
TU399520 lncRNA downstream 642730 3710702 ~ 3712919 (+) True G337273
TU399623 lncRNA downstream 675165 3743137 ~ 3745935 (+) True G337374
XM_034298756.1 mRNA upstream 2113 3031648 ~ 3039255 (+) True lsm12a
XM_034298751.1 mRNA upstream 17782 2995277 ~ 3023586 (+) True hdac5
XM_026946102.2 mRNA upstream 151225 2845407 ~ 2890143 (+) True tanc2a
XM_026946022.2 mRNA upstream 299774 2671258 ~ 2741594 (+) True wnk4b
XM_034298395.1 mRNA upstream 381090 2607346 ~ 2660278 (+) False arhgap27l
XM_026945985.2 mRNA downstream 3928 3071900 ~ 3091878 (+) True sdr42e2
XM_034298622.1 mRNA downstream 44269 3112241 ~ 3127730 (+) False mfsd13al
XM_034298620.1 mRNA downstream 44269 3112241 ~ 3127728 (+) True mfsd13al
XM_034298621.1 mRNA downstream 44269 3112241 ~ 3127728 (+) False mfsd13al
XM_034298349.1 mRNA downstream 60732 3128704 ~ 3137973 (+) True si:ch211-165g14.1
XR_004577078.1 other upstream 648890 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 648896 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 648993 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 671292 2358116 ~ 2370076 (+) False LOC113546300
TU399169 other upstream 719951 2317025 ~ 2321417 (+) False LOC113546301
TU400576 other downstream 1284550 4352522 ~ 4355029 (+) True G338163
TU401842 other downstream 3271535 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 3536685 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 3643043 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 5214988 8282960 ~ 8285204 (+) True G340208

Expression Profile