RNA id: XM_034298432.1


Basic Information

Item Value
RNA id XM_034298432.1
length 1617
RNA type mRNA
GC content 0.54
exon number 9
gene id spag1a
representative False

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 1683334 ~ 1701731 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTCCCCGGCTGTagtgtggtgTAAATGGGTAACGCGCAGAAGAAGAGCGCGGGTGCGAGTTCCGGTGTCGCGAGCCCGGCGCGCAGCAGAGCTCGCGAGGGGAATCCCGGAAGCTCGGAGGGGAAGAAGCCGGCGCACGCGAACGGCGCTCACGCCGCGGAGGCAGAGCGGCGGGGAGACGAGGCGGAAACCGGAAACGCCGGAACGCACGCGGTGAACCTCGACGCCCCCGCCGGGGATCTGCCCCCTGCGCTCGCGCGCCTCAAAAACGAGGGCAACATGCTGTTTAAGAGCGGACAGTTCGGGCACGCGCTGGAGAAGTACACCCAGGCCATAGACGGGTACACACAGTCAGgtATTGACAGTCCTGAGGATCTGTGTATTTTGTACTCCAACAGAGCTGCTTGCTATCTGAAAGATGGGAACTGTACAGACTGCATTCAGGACTGCACCagTGCGCTGGAGCTCCGCCCCTTTTCCCTGAAGCCCCTCCTCCGCAGGGCGATGGCCTACGAGTCTCTGGAGCGCTACAGGAAGGCGTATGTGGATTACAAAACTGTCCTGCAGATCGACTCCAGCGTACAGGCGGCTCAAGACAGCGTACACAGGATCACAAAGCAGCTGATGGAGCAGGATGGTCCTGACTGGAGAGAGAAGCTTCCCGAGATTCCTAACGTTCCCATTTCAGCACAGCAGCACCGGAGGGAAGAACCGAGCGATGAGGTTCTCCAGGCACGAGCAGCCAGAGCCGAACAGGAGAAGGCTAGAAAAGCCGAGGCGCGTTTCACTCTGCTGAAGCAGGAAGGTAACGATCTGGTGAAGAGAGGCGAGTTTGAGAGGGCGATGGAGAAATACAGCGAGTGTATCGCTCTCAAACCCGCCGAGTGCTCCATCTACACCAACAGagcGCTGTGTTTCCTGAAGCTGGACCGTTTCGCCGAGGCGAGGCAGGACTGTGACTCTGCGCTACAGATGGAGCCGGACAATAAGAAAGCGTTTTACAGACGAGCGCTCGCTCACAAAGGCCTGAAGgacttCCTGTCGTCCAGCTCTGACCTGCAGGAGGTTCTGCGTTTGGACCCGAATGTCCGTGAGGCTGAACAGGAGCTACAGGAGGTCACGGTTCTGCTGAGGGAGAGTCTGCTGGAGTCAAACACTCAGGCTGATGATTTACACGCTGACGATAAACGATGAGAAAATCAGAACAGCTGCACTCGTCTTCCAGCAGAACGACAACGAGCTTCAGccgagagacagaaacacacacacacacaccgcacacacacacacacacacacacacacacacacacacacacacacacacgaggatGCTCTTCTGCATGTTCCTCCTTCATTCAGGAaggagatgaagatgaagatgaatgattagCCGTGATGCGGGAGCTGATCGGCGCTCAGCGTGGCCATGTGCCGATATTCAAACCCCAAACTGTCTCTCAGCACGACGCTTCAAAAACctctttatcatcatcataaaatTCACATTAAGCTCTTCCTTTTATTAAATACAACCCTGCTCtgaatctataaataaattaagacatAAAGAACTCCAATTcaaattaaagagaaatgtaatgtttaatgtttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU398446 lncRNA upstream 3038 1675057 ~ 1680296 (+) False polr2k
TU398224 lncRNA upstream 95040 1586247 ~ 1588294 (+) True G336275
TU398401 lncRNA upstream 103034 1579795 ~ 1580300 (+) True G336406
TU398216 lncRNA upstream 132134 1549855 ~ 1551200 (+) True G336267
TU398386 lncRNA upstream 134104 1548991 ~ 1549230 (+) True G336391
TU398200 lncRNA downstream 36432 1738163 ~ 1741007 (+) False G336256
TU398201 lncRNA downstream 36432 1738163 ~ 1741007 (+) True G336256
TU398210 lncRNA downstream 54454 1756185 ~ 1757404 (+) True G336261
TU398493 lncRNA downstream 119401 1821132 ~ 1842536 (+) True G336481
TU398494 lncRNA downstream 140858 1842589 ~ 1842970 (+) True G336482
XM_026946070.2 mRNA upstream 2982 1675040 ~ 1680352 (+) True polr2k
XM_026946045.2 mRNA upstream 53338 1610614 ~ 1629996 (+) True adck5
XM_026946046.2 mRNA upstream 74480 1596847 ~ 1608854 (+) True lix1l
XM_034298552.1 mRNA upstream 96872 1578998 ~ 1586462 (+) True prcc
XM_034298554.1 mRNA upstream 105178 1574337 ~ 1578156 (+) True mrpl24
XM_034298574.1 mRNA downstream 102939 1804670 ~ 1842048 (+) False grhl2b
XM_034298573.1 mRNA downstream 102940 1804671 ~ 1842048 (+) True grhl2b
XM_034298501.1 mRNA downstream 181714 1883445 ~ 1891699 (+) True psmg2
XM_034298502.1 mRNA downstream 181716 1883447 ~ 1891699 (+) False psmg2
XM_026945978.2 mRNA downstream 219204 1920935 ~ 1932700 (+) False seh1l
TU398432 other upstream 23875 1657317 ~ 1659459 (+) True G336433
TU398302 other upstream 347804 1269809 ~ 1335530 (+) False G336334
TU398322 other upstream 355827 1325816 ~ 1327507 (+) True G336350
TU398245 other upstream 547227 1132988 ~ 1136107 (+) False mllt11
TU398147 other upstream 707013 973669 ~ 976321 (+) True G336213
TU398943 other downstream 174543 1876274 ~ 1945866 (+) True G336822
TU399169 other downstream 615294 2317025 ~ 2321417 (+) False LOC113546301
TU399163 other downstream 656385 2358116 ~ 2370076 (+) False LOC113546300
XR_004577078.1 other downstream 656397 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other downstream 656397 2358128 ~ 2392472 (+) True LOC113546300

Expression Profile