RNA id: XM_034298639.1


Basic Information

Item Value
RNA id XM_034298639.1
length 1008
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC117595860
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 949475 ~ 951383 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGTACCTGAACCACCTCACCTGGCTCTTCTCAATGCAGAGGAGCATGCTGGATGTATTTTCGACGTGCACACGTGGGTCGTGCTACATCCTGAAGCACCCGAGATCCCGCAGGAACAACGGTTATGTGCAACACAATGCTGTGAACCAAGGACAACTGTAGATGCTAATGTTAAAACCTGTGTAGTTAACCCTGACTCCAGTGTATCTAATGCTAACACTGCCTCCTGCGTAGTTAACCCTGACTCCAGTGTATCTAACGCTAACACTGCCTCCTGCGTAGTTAACCCTGACTCCAGTGTATCTAACGCTAACACTGCCTCCTGCGTAGTTAACCCTGACTCCAGTGTATCTAACGCTAACACTGCCTCCTGCGTAGTTAACCCTGACTCCAGTGTATCTAACGCTAACACTGCCTCCTGCGTAGTTAACCCTGACTCCAGTGTATCTAACGCTAACACTGCCTCCTGCGTAGTTAACCCTGACTCCAGTGTATCTAACGCTAACACTGCCTCCTGTGTAGTTAACCCTGACTCCAGTGTATCTAACGCTAACACTGCCTCCTGCGTAGTTAACCCTGACTCCAGTGTATCTAACGCTAACACTGCCTCCTGCGTAGTTAACCCTGACTCCAGTGTATCTAACGCTAACACTGCCTCCTGCGTAGTTAACCCTGACTCCAGTGTATCTAACGCTAACACTGCCTCCTGCGTAGTTAACCCTGACTCCAGTGTATCTAGCGCTAACACTGCCTCCTGCGTAGTTAACCCTGACTCCAGTGTATCTAACGCTAACACTGCCTCCTGCGTAGTTAACCCTGACTCCAGTGTATCTAACGCTAACACTGCCTCCCGCGTAGTTAACCCTGACTCCAGTGTATCTAGCGCTAACACTGCCTCCCGCGTAGTTAACCCTGACTCCAGTGTATCTAACGCTAACACTGCCTCCCTGCGTGAAGTTAACCCTGATTCCAGTGTATCTAACGCTAACATTGCCTCCCGTAGTTAA

Function

GO: NA

KEGG:

id description
ko05418 Fluid shear stress and atherosclerosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU398124 lncRNA upstream 42583 890196 ~ 906892 (+) False G336202
TU398135 lncRNA upstream 42987 905239 ~ 906488 (+) True G336209
TU398126 lncRNA upstream 55979 889818 ~ 893496 (+) True G336202
XR_003403018.2 lncRNA upstream 170449 775875 ~ 779026 (+) True LOC113528997
XR_004577067.1 lncRNA upstream 170449 775878 ~ 779026 (+) False LOC113528997
TU398176 lncRNA downstream 54849 1006232 ~ 1008093 (+) True G336241
TU398178 lncRNA downstream 64589 1015972 ~ 1016631 (+) True G336243
TU398148 lncRNA downstream 68856 1020239 ~ 1064155 (+) True G336214
TU398184 lncRNA downstream 76673 1028056 ~ 1127409 (+) True G336246
TU398182 lncRNA downstream 166260 1117643 ~ 1139760 (+) False G336245
XM_034298638.1 mRNA upstream 42705 893766 ~ 906770 (+) True utp18
XM_026917884.2 mRNA upstream 132232 806309 ~ 817243 (+) True si:dkey-89b17.4
XM_026917885.2 mRNA upstream 132232 806311 ~ 817243 (+) False si:dkey-89b17.4
XM_034298470.1 mRNA upstream 133005 806305 ~ 816470 (+) False si:dkey-89b17.4
XM_034298749.1 mRNA downstream 73095 1024478 ~ 1033504 (+) True ube2m
XM_034298746.1 mRNA downstream 87582 1038965 ~ 1061366 (+) False kpnb1
XM_034298745.1 mRNA downstream 87583 1038966 ~ 1063015 (+) True kpnb1
XM_034298747.1 mRNA downstream 114384 1065767 ~ 1076546 (+) True LOC113529039
XM_034298748.1 mRNA downstream 114384 1065767 ~ 1076546 (+) False LOC113529039
TU398091 other upstream 154780 794117 ~ 794695 (+) True G336172
TU398067 other upstream 199801 739369 ~ 749674 (+) True G336161
TU397921 other upstream 662260 286849 ~ 287215 (+) True G336034
TU398147 other downstream 22286 973669 ~ 976321 (+) True G336213
TU398245 other downstream 181605 1132988 ~ 1136107 (+) False mllt11
TU398302 other downstream 318426 1269809 ~ 1335530 (+) False G336334
TU398322 other downstream 374433 1325816 ~ 1327507 (+) True G336350
TU398432 other downstream 705934 1657317 ~ 1659459 (+) True G336433

Expression Profile