RNA id: XM_034298650.1


Basic Information

Item Value
RNA id XM_034298650.1
length 963
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC113536250
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 5470562 ~ 5472111 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGCACCATAAAATAGCAGTGAACAATAGCCACAGGAGCAGCAGCTGTAGCAGTACATTTCAAACAGACCTGTTACCTCCCATCTACGGTGTGGAGATGAGTGTGGCACTGGTGGGGAACATACTGGCACTGTGGCTGCTTGTGACTAAGGAGAAGAAGAACTGGCACACGGGAGTGGTGTTCTCCTGCAACCTGGTCATCAGTGACATCTTTTACGCCCTCACTCTCCCCCTTCTTATCCATTACTATTCAAGAGGACGGATCTGGAAATTTGGTGATGCTCTCTGCAAAATAGAGCACTTTCTCTTCACCTGTAACCTCTACGTCAGCATTTACTTCATCATGTGCATCAGTGTTAATAGATACCTGGCCATTGTTCATCCAATCTTCACACGCAAACACATTCGACCAAAACATGCCAAGATCATCAGTGTGTTCGTCTGGATCTTTGTGGCAAGCCTTTCATCTCCAATCCTCTACTTTTCAGGTGTCAAGAAGGACAGATGTTCCTTATTTGCAAATTTGCCCAAAAAATCAAACAGGTCTACCTACAGGGTGTTTATGGCTGTTACGGGCTGTTTTGTCCCATTTGTAGTTACTTTTGCATCCTATTTTGATCTAATATGGgtggtttttaaaaatgcaactaTCACCTCActgcagaagaaaaaagtgGCTCTGATTGTGGGTTTAGGCTGCGTCCTGTACGCTGTGTCTTTTATCCCCTTTCACATTCTGCAAATATGGCACTTTAAACTGAGGGAAGAAGGTAAGACTAATTGTAACGTGTATAATGGATACCAAGTGTCAAAGGCATTAGCCTGCCTGAACATGTGCCTCCATCCCATCCTGTACATGGCTGTGTTTGACAGTATCAGGGCAGTGTGCTGTAGAAAAAGCTCCAAAAGtCACAAGGGACCACTGTGGTACTCTGTAGATCCATTAAGTCTATACCACAGCTAA

Function

GO: NA

KEGG:

id description
K08387 P2RY11; P2Y purinoceptor 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU401337 lncRNA upstream 38298 5431849 ~ 5432264 (+) True G338799
TU401215 lncRNA upstream 78370 5387988 ~ 5392192 (+) True G338683
XR_004577050.1 lncRNA upstream 84410 5377206 ~ 5386152 (+) True LOC117595846
TU401186 lncRNA upstream 228978 5241325 ~ 5241584 (+) True G338658
TU400698 lncRNA upstream 690234 4761313 ~ 4780328 (+) False stxbp2
TU401352 lncRNA downstream 52929 5525040 ~ 5526609 (+) True G338814
TU401392 lncRNA downstream 255067 5727178 ~ 5728306 (+) True G338842
TU401393 lncRNA downstream 255067 5727178 ~ 5728022 (+) False G338842
TU401536 lncRNA downstream 382547 5854658 ~ 5855430 (+) True G338961
XR_003403669.2 lncRNA downstream 503761 5975872 ~ 5981732 (+) True LOC113536203
XM_034298494.1 mRNA upstream 3201 5463055 ~ 5467361 (+) True LOC113536209
XM_034298495.1 mRNA upstream 3201 5463055 ~ 5467361 (+) False LOC113536209
XM_026929816.2 mRNA upstream 15325 5446993 ~ 5455237 (+) True ppan
XM_026945958.2 mRNA upstream 216299 5143226 ~ 5254263 (+) True olfm2a
XM_026945957.2 mRNA upstream 216299 5206144 ~ 5254263 (+) False olfm2a
XM_034298492.1 mRNA downstream 1831 5473942 ~ 5511202 (+) False LOC113536275
XM_034298493.1 mRNA downstream 5602 5477713 ~ 5511202 (+) True LOC113536275
XM_026929473.2 mRNA downstream 30123 5502234 ~ 5511202 (+) True LOC113535910
XM_026929474.2 mRNA downstream 36177 5508288 ~ 5511202 (+) False LOC113535910
XM_026929400.2 mRNA downstream 40985 5513096 ~ 5520547 (+) True eif3g
TU400576 other upstream 1115533 4352522 ~ 4355029 (+) True G338163
XR_004577078.1 other upstream 3078084 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 3078090 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 3078187 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 3100486 2358116 ~ 2370076 (+) False LOC113546300
TU401842 other downstream 867396 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 1132546 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 1238904 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 2810849 8282960 ~ 8285204 (+) True G340208
TU403493 other downstream 3440817 8912928 ~ 8915844 (+) True sem1

Expression Profile