RNA id: XM_034298742.1


Basic Information

Item Value
RNA id XM_034298742.1
length 1889
RNA type mRNA
GC content 0.51
exon number 8
gene id zgc:63863
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 5704671 ~ 5726395 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCCTGCAAGCAAGTGCGGTTGAGTGACCGGCGTTGAAACGGAAGTGTTTGCCCTGACAGAGTGGATACTTCGAACAGATGGcggtttattttaattacagagTTGAAATAGTTGAATGATATCAGTATTTatcatatattaatatattgtagACCTGGAAGAGatgaaaaaggtgaaaaaacgCCACCAGGTGAATGGGAGCAGAACAGCAGCAGGCAGACACGAAGATCACATGTCCTGGAAGAAGCAGAAGCTTGCAGACATCCAGCAGGCCCTGAACAGTGACCCTGTGGACATCGAGACCCTGCGCAGTGCAGCTGTCAGCAAGGGAGGCTTGTTGACGGACGATGTGCGAAGAAAAGTTTGGCCCAAGCTCCTCAGCGTCAACGTCTTTGACCTTCCTGCCAAacctgCTAAAAATATCAGAGAGAACCACAAAGACTACAACCAGGTGCTTCTGGATGTCAGGCGCTCCATGCGCCGATTCCCGAGAGGGATGCGGGCTGATGAGAGGGAGGTGCTGCAGGAGCAGCTGATTGACATCATCCTGGAAGTTCTGAGGAGGAACCCTCAACTGCACTACTACCAGGGCTACCATGATATAGTGGTGACCTTCCTGCTGGTGGTAGGAGAGCGCATGGCCATAGCGATAGTTGAGAAGCTGTCCAATCACCACCTCAGGGACTTTATGGACCCCACCATGGACAGCACCAAACACATCCTGAATTACCTGATGCCCATTCTGGAGCAGGTGGACCCTGAGCTGCACGACTTCATGCTGAGagcCGAGGTCGGCACCATCTTTGCCCTCAGTTGGCTGATCACGTGGTACGGCCACGTCCTCTCGGACTTCCGGCACGTTCTGCGGCTCTATGATTTCTTCCTAGCCTCCCATCCACTCATGGCCATTTACTTTGCTGCTGTGATTGTGTTGTATCGGGAGCGGGAGGTGAAGAGCAGCGAGTGTGACATGGCCAGTGTTCATCACCTGCTCTCTCAGATTCCTCAGGACCTTCCATACGAGCAGCTCATCTCACGCACACAGAACCTCTTCAGCCGCTACCCCCCCACCCAGCTCACCTGCTCCGCCACACTGCAGTCCCgcaacagcATTGCCATCAGCTCCTTTCAGGACTTCCAGACATCCACTCAACAGCAGCGGCCTGACTCCATCCTGCGGCAGCAGCGTCAGCATCTCCACCAGCGCCAAGATGCCCGCCTCGCCCTGGCACACCCCCACAGCGTTCAGCCCAGCGGTGCCCAGCAGCTCATAAGGATGGCCGTGTGGGGTATTTCAGCTACACTTGGGGCGGCTGCGCTGGCTGTCGCACAGACTGCTATGGACTGGGCACCTGACTTTGTCCTGCAGCTGTTCTGAcctccagagtgtgtgtgtatatgtgtgtgtctatatgcgTGCTTTTCATGTACCAAATTCAGAGCGAATTACTAGTAAACCCATCTTCTGTTATCACGTACCAAAAAACGTCCTAAAGAAATACGataggtgcaaaaaaaaaagcatgggtttatttagcattttgctCCTTCGCAGTTCTACACTTTGCCAAGCTAATATTAGGAGTATGAAAGGTGGCGGATGGGTTTTTGTAATGATAAGCATTTCTGAACGCCTTTCCATCAGCAGAATGTCGGAGGGAAAAAGTGCGCCGATAGCGGATTCCAAACAGCAGCAGACGTACAGATTATTaaaccgttttttttttccctccttcctcTCTCCACTGCTGAAGGACTTTGCGGTGGAGTGAAAGAAACAGCTCATTGAGATGAGAAGAGACGAGTGCGAGCAGGTGGGTTTCTTTGGTCTGTGGAGAATAAAGAGCTCGGCCTGCAATGAACGCAGCactcgagaaaaaaaaaaaaa

Function

GO:      GO:0005097,GO:0032313

KEGG:

id description
K20372 TBC1D20, GYP8; TBC1 domain family member 20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU401352 lncRNA upstream 178063 5525040 ~ 5526609 (+) True G338814
TU401337 lncRNA upstream 272408 5431849 ~ 5432264 (+) True G338799
TU401215 lncRNA upstream 312480 5387988 ~ 5392192 (+) True G338683
XR_004577050.1 lncRNA upstream 318520 5377206 ~ 5386152 (+) True LOC117595846
TU401186 lncRNA upstream 463088 5241325 ~ 5241584 (+) True G338658
TU401392 lncRNA downstream 783 5727178 ~ 5728306 (+) True G338842
TU401393 lncRNA downstream 783 5727178 ~ 5728022 (+) False G338842
TU401536 lncRNA downstream 128263 5854658 ~ 5855430 (+) True G338961
XR_003403669.2 lncRNA downstream 249477 5975872 ~ 5981732 (+) True LOC113536203
TU401647 lncRNA downstream 261416 5987811 ~ 5988492 (+) True G339055
XM_026929890.2 mRNA upstream 30481 5669693 ~ 5674191 (+) True cfap20
XM_026929889.2 mRNA upstream 31683 5669692 ~ 5672989 (+) False cfap20
XM_026929494.2 mRNA upstream 35656 5665172 ~ 5669016 (+) True oxsm
XM_026929638.2 mRNA upstream 49477 5632329 ~ 5655195 (+) False LOC113535991
XM_026929973.2 mRNA downstream 201311 5927706 ~ 5944224 (+) True slc39a4
XM_026930094.2 mRNA downstream 374151 6100546 ~ 6109043 (+) True LOC113536255
XM_026930200.2 mRNA downstream 385706 6112101 ~ 6116707 (+) True LOC113536325
XM_026929397.2 mRNA downstream 461774 6188169 ~ 6197615 (+) True cdca7b
XM_026929989.2 mRNA downstream 546552 6272947 ~ 6275012 (+) True sp8a
TU400576 other upstream 1349643 4352522 ~ 4355029 (+) True G338163
XR_004577078.1 other upstream 3312194 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 3312200 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 3312297 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 3334596 2358116 ~ 2370076 (+) False LOC113546300
TU401842 other downstream 613112 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 878262 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 984620 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 2556565 8282960 ~ 8285204 (+) True G340208
TU403493 other downstream 3186533 8912928 ~ 8915844 (+) True sem1

Expression Profile