RNA id: XM_034298748.1


Basic Information

Item Value
RNA id XM_034298748.1
length 2889
RNA type mRNA
GC content 0.55
exon number 9
gene id LOC113529039
representative False

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 1065767 ~ 1076546 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCAGTTTGGCACTTCCGTAAACCAAGGCAGCGGTTGAGCCTGAGCGCGAGCGAGCGCTGTTTAGTTAGCATCTGTAGCTACCTTAAAGCGGCAGCGCCCTTCATGAGGACTCACGGGGTGgggtttatttttataaagctttattttgtgttttctgactGAAAGGAGCGCGCGGCTTCGgtgtatgtagtgtatggaggaaaaaagaaaaaaaatagatgtgtgtgaatgtgtcagAGGCGCAGGCGCACCGTTAACTAGCATAGCATCCGCGCTAATAAAGGAGAGAATCTgcgacaaaaaaaaacaaatctgctGGAGATGACTTCCGCTCATGAGCGCTGAGGTGTTTATATCCCAGAGCGAGgggaagaaggagagagagatgtggagtTTAATGgtgatgtgagagagagagagagagagagagagagagaagcgcGCGCGCGGTGGGAATGATGAGTAACGTTAACGTGAACGTGAACGCGCAGGACCGGAGTCCAGACTTCGTCCTCATGCGTTTGGTTTCTGCAGCCGAGTATGATGACCTGGAGCCGGACCGTGAGGAGGTGCTGTCCGCTCATCAGAGACCGGAGAAGAGCAGCGGGTTAACCCCAGCAGCAGcgggagcaggagcaggagcaggaggcaGAGAGGAGCCGAACTACAGCGCCGACACGCAGACATGTCAGTGGATCCCTGTGCTCAGACTCAGCAACACTGaggaacctcaggaacttcagGAAGGACTGTGTCACAGACACGGACACCTAAAGGAACACTCTATAGGGGACAAACCGGGTCACTTCGCCCCCAGTGACTCCCTCAGACCCGGGACCGGGACCGGGACCTCCACCCTGGATCCTGTCCTGAGTCTGGCTCGGCAGCTGAGTGAGATCGGACCGGGCTCGGACCCGACGCGGAAGGACGAAGGGGAGGTCTCGGTGTGCTCCTGTCAGCCCGGAGAGGACCCGAGTGAGACCAGTGACGCGCTGCTGGTGTTGGAGGGTTTGGGTTCGAAGGGGGCGAAGGAGCAGACGGGTTTCGCTCAGACTCTAAGCGACTCCGCGTCTCTGAGCGGCCTGATGCGCCagctgacctctgacccctgctGTCAGGATGCCGCCGCCCCCGCGGCCCCTCTTAGTCGCCCACCCACTCCGAAACACGTGGGCTCGGCCCTGCAGCTCTCGGCCTGCGGCAGCAGCGGCAGCGTTAACGGCGGGAGCAGGGAGAGGGAGCGAGGGAAGTCCAGGAAGGGTTCGCTCAAGGTGTGTTTGAGCAAACTGTTCCGCACTAAAAGCACCGGCAGCACCGACGGAGGTCACATGACCAACAAGAGGCCGTCCCTCGCTTCGTCCACTTCATCCGGAGGCAGCCTCGTCGACGTGTTCGGCCCTGGCGATCCCGACACCCCCAGgtctCAGACGGTCAGGCCTCACAGTGCCTCCTACTCTCCTGTTCCCTTCACAGatgATTTGGGAGCACCTCAGCCTGGGCGGTTACTCTCCTCAGCGCAGTCACTacagccttcacacacacactcacacacacacatccaccacaGCCTGAGTCTGaatgATACGACTCTCCGCAGTgttccacacaggccacgccccctccaGAACGACAGCCAATCAGGTGGTCCGGTACAGCGGCGGTCCCTGATGTGTCCTCTGACCAGCAGCTTCGCCACCAGCCTCCGAGAGCTGGAGCAGtgcggGTGGTACTGGGGGCCGATGAACTGGGAGGATGCGGAGATGAAGCTGAAGGGGAAGGCAGATGGTTCGTTCCTGGTGCGAGACAGCTCAGACCCGAGATACATCCTCAGCCTGAGCTTCAGATCGCAGGGGGTCACACACCACACCCGCATGGAGCActacagagggaCGTTCAGTCTGTGGTGTCACCCGAAGTTTGAGGATCGCTGTCACTCAGTGGTGGAGTTTATCGAGCGAGCCATCATGCACTCCAAAAACGGACGATTCCTGTACTTCCTGCGCTCACGAGTTCCAGGTCTTCCCCCCACCCCGGTGCAGCTCCTGTACCCAGTGTCTCGGTTCAGCAGTGTGAAGTCTCTACAGCATCTCTGTCGCTTCTGCATCAGACAACTCGTCCGCATAGACCACATAGAGGAGCTGCCACTGcccacGCCTTTGATCGGGTACTTACGGAAGTTCTATTTCTATGATCCAGAAGAGGAGAAGAACCTGTCAATCAAAGAATCAGGGCGGGACTCCAGTGCACAGGAGGCGGAGTCTCAGACGTAGCAGGAACAGGAGATGGATAGAgtctttatttttatttggattaCACAGAGACCTGCTGAGACCAAACCTGGCTGAGTTTTGATTGACAGATGGactactggttttttttttttttttgtaaacactgAAGGACCTAATCACTTCTTCTGGAGGTGTTGTGATTGTAGTGTTATTTCTAACAATGATCCTCCCTCCAGGAGGGAAGGGGACGTGGAAACCCGCAGCTGAAGCAGGATGAGATGTTAATGTGAAGATGTTCTGATGCACTGATGGTGAAGAGCGATCACAGAGCCACGTGTGGAACTGTGATGAGTTCAAACTGGACATGCTTCTGCTCACATACGAGGTTCTACTCATACTTATGTTCTCTCATGGTCAGTATAAgggtaaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatagcgTGTGTATGGTGTACATGGAACTGTATGGAGAAGATCTCTTCTATCCAAACTAAAAGACTGTTCGAACTGGAGCTGCAGGTTCTGCTGTGTGGAACAGGACCGTGTTCTCCTAAACTCATCTCAAACACACAGCGTGGAAATAAACATGGggtgatgatttaaaaaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU398148 lncRNA upstream 1612 1020239 ~ 1064155 (+) True G336214
TU398178 lncRNA upstream 49136 1015972 ~ 1016631 (+) True G336243
TU398176 lncRNA upstream 57674 1006232 ~ 1008093 (+) True G336241
TU398124 lncRNA upstream 158875 890196 ~ 906892 (+) False G336202
TU398182 lncRNA downstream 41097 1117643 ~ 1139760 (+) False G336245
TU398183 lncRNA downstream 41097 1117643 ~ 1152914 (+) True G336245
TU398244 lncRNA downstream 45721 1122267 ~ 1123573 (+) True G336295
TU398246 lncRNA downstream 56442 1132988 ~ 1136107 (+) False mllt11
TU398180 lncRNA downstream 73470 1150016 ~ 1152914 (+) False G336245
XM_034298745.1 mRNA upstream 2752 1038966 ~ 1063015 (+) True kpnb1
XM_034298746.1 mRNA upstream 4401 1038965 ~ 1061366 (+) False kpnb1
XM_034298749.1 mRNA upstream 32263 1024478 ~ 1033504 (+) True ube2m
XM_034298639.1 mRNA upstream 114384 949475 ~ 951383 (+) True LOC117595860
XM_034298503.1 mRNA upstream 115649 910572 ~ 950118 (+) True LOC113529000
XM_034298360.1 mRNA downstream 4448 1080994 ~ 1103079 (+) True LOC113529037
XM_034298623.1 mRNA downstream 56409 1132955 ~ 1136124 (+) True mllt11
XM_034298350.1 mRNA downstream 60531 1137077 ~ 1147087 (+) True gabpb2a
XM_026918362.2 mRNA downstream 84187 1160733 ~ 1169288 (+) True rab25a
XM_034298619.1 mRNA downstream 281464 1358010 ~ 1376292 (+) True fbxl20
TU398147 other upstream 89446 973669 ~ 976321 (+) True G336213
TU398091 other upstream 271072 794117 ~ 794695 (+) True G336172
TU398067 other upstream 316093 739369 ~ 749674 (+) True G336161
TU397921 other upstream 778552 286849 ~ 287215 (+) True G336034
TU398245 other downstream 56442 1132988 ~ 1136107 (+) False mllt11
TU398302 other downstream 193263 1269809 ~ 1335530 (+) False G336334
TU398322 other downstream 249270 1325816 ~ 1327507 (+) True G336350
TU398432 other downstream 580771 1657317 ~ 1659459 (+) True G336433
TU398943 other downstream 799728 1876274 ~ 1945866 (+) True G336822

Expression Profile