RNA id: XM_034298756.1


Basic Information

Item Value
RNA id XM_034298756.1
length 2894
RNA type mRNA
GC content 0.45
exon number 5
gene id lsm12a
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 3031648 ~ 3039255 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTGACGTAAGCACGTACGCGCTCCGTCCTGCGCTCCGGCTGCTTGCGTTTGGCGGAGAAGATGGCGGCTCCGGGACCGGGGGAGTATTTCAGCATCGGGAGCCATGTCGCCTGCCTCACCTGCCTGGGACAGCGCTTACAGGGAGAAGTCGTCGCTTTCGACTATCAGACCAAGATGCTGACTTTGAAATGCCCCTCATCCAGCGGGAAGTCCCACCTTAACGACGTCATCCTGGTTAACTTAGCCTACGTGTCCAAAGTGGACACCATCAACGAGCGCAGCGGGACTCCGCCCCCTTTAGCGTCTCTCAATTTCAGCAAGCTCGCCAGCAGAGCTCGGGCGGAAAAGGAAGACAAGTTGTCGCAGGCGTATGCGATCAGCGCCGGAGTCTCGGTGGAGGGCCAGCAGCTGTTCCAGACCATTCATAAAACCATCAAAGACTGCAAGTGGCAGGAGAAGAACATCGTGGTGATGGATGATGTCGTCATCACGCCGCCGTACCGAGCAGACAACTGCAGAGGCAAAGAGGGCAGTGCGCTAGGACACGTACGCAAAATTgtggagAAACACTTCCGTGACATGGACCAGAAATCTGTGCAGCGCTCACAAGCACAGCAAACACAGAAGGACTCGGTCTTGTCGGCGTGAGCGCCGCCAAACgctagattattattttttgtctgtttgttttggggttttgttttgtaatcTGCCTCGAGGCTGAGGTCGAGGTAACCGCCTCCTTCGTCCCCACCGGCACGAGTGTTCTACACGTCTGCACGgagaacaaaaaacagaaaaacagccaAAACGACAGATTAGCAGAATtagttttagaaatatttaaattaacaaCAGAGCGTCTTTTCTCCCAGCATcccttttcttcctctcctgAAATAAACGTCCTACCCTCACAtatttgccaagaagaatgaACATCAGGTGAACACCAGGCTCTTGGttcttttatgctttttttgttttgttttgttttgttttgtttgaagtGTCCGAACAAAATCTGACTTGAAAGGTAttggagaaaagaaggaaagactTCGCAGTTACCGGTgctgaaagtgtgtttttttattattattattattattattattattattattattatgatgatgatgtaagagGAAACTGAAGTGACGCGAGCGATGTTGAGCATTTTTTCAGCCCTCCTCCGATTTATCTTGCATGGAAATTAAAAATCCAGTGCAGAGGATGTGAAGTAGTTCACTCCAGCCGAGAGCTGTCGATTCACTGCAACAGTGTTTTTGCCGCGCGAGCTTTGGTGTGAACGAGTCAAGATGGAGTTTTGTGGCAACGGATACTGAATCATGCCTGCAGTTTATTCACATGCTTTCGCATACGTTCTGTAGGTTAGATATACAGTCCGAGTGGCCACGAGCTACTtgtgaaaccatggcaaccggCAGTAAACTAAAGGTGGCACCGCCCACTAGTGGTCAACGTAGAGTGACTTCAGCGATGATAAACAGACGGGTAAACACTTTAGAGCCGCAGATGGTGCAGGAAGTGATTTGCTTTGCCGCAGTGTGAATGTACCACCTGACTGTGGTGTCCAATCAGAGCCCAGTTTCTGAAACTCATCATTATCTTAAAGGAAATCTTCACCCTGAAACAAGCTTATACTGAAATgcctgtgatgtgtttagtgattctggggctaatttgttggttggtgctgtattatcattattcctgtgagacgTTAGCGGTTGCGTGTTACTCTGATGTCACAGAATGATGATGTCATAGCTAGCGCAATTAAAATGacgtttaataggagaaaaaatatCCAAGATCTCAAACAGAAGGGATAACGGTCAGGTTTCGCAGTTACCTCCTAAATtcttattaatgagaaatccagtgtagaaatAGTGGAGATGTTGATGAGAATGCTGGACTCAGAGTCCCAGAATGCAAAGCAGCTACACGACTCGTCTCCTCTAGTTTGCGAAGCTTTGGAAGgcgatctgtttgagcagagtgtacagaggaggaagtgagagagctggacaaacTAAAGCACTAAAGTGCCGccgcatcgctctctttaggtagagatgattCGACGGCTAAATCCTGCTACATCGTTATCAGCAGGCAGTCCAAtggaattgtgggtaatttagGAAAACCATTAATGAGAGTGAAAATAGAGCATCACATCCATGATAGACGTTTGAACTAAAAACCCAGataacatgttaattataaagattagcTTGAAAgtcgttcagggtggatttttccttttataccatGTTTGTGTTGTGACTGTTTTGGGAAACTCCGCCCTGATCCGCAGCGAGACGTTGTGCTTGATTCCACTTGCATTATGGAATCTGTGTGGATCAGATTGGACGCTCAAATGTTAGCCTAGATTTTCTCATAAAACTCGCCTAaaccaaccaatcaggagcACCGAGTCCTTAGCACAGATGTGTCAGGACTTTGTGTTGGCGTGTCCACACCTGGTTggttcgtgtttttttttttttttaatatatcagGTGCTGGACACGAGTCATTTCCtcatctcagaaaaaaaaatctctgaatgCTTGTAACTTGGCACAGAATTTCTGTCCTTGTGTTTGGCTGCTCATGTGTCTAAACGAAGGAAGCGAAACTCTTCGATAAGTTTACAGTGTATGTGAAAACCCCAAGCTGGCAGTGGACAAGGCTGGTGGAGAAAAGCTTAACAGCGTGAGGAGCCTCCTCCATCTTGATGAGAGCTcgtattactgttattattattattattattaaacacctCATTGTGAAGTGAACACCGTGTCTCTTCACTCCTGTACAGCAGAAAGCCTCAGCGATGAATTTTAACAGCAGC

Function

GO: NA

KEGG:

id description
K23643 LSM12; protein LSM12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU399423 lncRNA upstream 12238 3019110 ~ 3019410 (+) True G337194
XR_003404701.2 lncRNA upstream 36377 2926524 ~ 2995271 (+) True LOC113546290
TU399362 lncRNA upstream 160739 2870683 ~ 2870909 (+) True G337138
TU399360 lncRNA upstream 168680 2862527 ~ 2862968 (+) True G337136
TU399353 lncRNA upstream 188773 2842664 ~ 2842875 (+) True G337129
TU399433 lncRNA downstream 56742 3095997 ~ 3102191 (+) True G337197
TU399479 lncRNA downstream 173256 3212511 ~ 3299308 (+) True G337233
TU399552 lncRNA downstream 450598 3489853 ~ 3491029 (+) True G337304
TU399520 lncRNA downstream 671447 3710702 ~ 3712919 (+) True G337273
TU399623 lncRNA downstream 703882 3743137 ~ 3745935 (+) True G337374
XM_034298751.1 mRNA upstream 8062 2995277 ~ 3023586 (+) True hdac5
XM_026946102.2 mRNA upstream 141505 2845407 ~ 2890143 (+) True tanc2a
XM_026946022.2 mRNA upstream 290054 2671258 ~ 2741594 (+) True wnk4b
XM_034298398.1 mRNA upstream 371370 2607346 ~ 2660278 (+) False arhgap27l
XM_034298407.1 mRNA downstream 2113 3041368 ~ 3067972 (+) True vwa3a
XM_034298408.1 mRNA downstream 2113 3041368 ~ 3067972 (+) False vwa3a
XM_034298410.1 mRNA downstream 2113 3041368 ~ 3063913 (+) False vwa3a
XM_034298409.1 mRNA downstream 4439 3043694 ~ 3067972 (+) False vwa3a
XM_026945985.2 mRNA downstream 32645 3071900 ~ 3091878 (+) True sdr42e2
XR_004577078.1 other upstream 639170 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 639176 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 639273 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 661572 2358116 ~ 2370076 (+) False LOC113546300
TU399169 other upstream 710231 2317025 ~ 2321417 (+) False LOC113546301
TU400576 other downstream 1313267 4352522 ~ 4355029 (+) True G338163
TU401842 other downstream 3300252 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 3565402 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 3671760 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 5243705 8282960 ~ 8285204 (+) True G340208

Expression Profile