RNA id: XM_034298849.1


Basic Information

Item Value
RNA id XM_034298849.1
length 5783
RNA type mRNA
GC content 0.41
exon number 12
gene id LOC113546299
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 2209792 ~ 2240423 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGAGATTCTTTCTGAAACCTCGATGCCAGTTTTAATGAGCAACTCGAAACATGAAGATTTAGAAAATGGGATTTATAATTCCACACAGTGACTGCTGACTGAAGCAGAAAAGGTTAGGCTTGACAGTAGCCAGCAGAGTGGCCAGGAACATGAAATGACCTTTCTATGCACACTCAACCAGTAGTGAAAGATGGAGAACCCttattttaacacaaacaaTGGCTCCTCACCCTTAGACCAGAGTCTAACCCAGATAAAGAGACCAGTCTCACCAGTATCCAGTCGAGTCTCTATGAGGAGTGATGCGTCCATGCATAACCCTTTTACCTTCAAAGATGGAGGCCCCTCATCTGAACACAGGCTAATGCAGAAAAAGAGACCAGATTCAGCAGTATCCAGTCGAGTCTCTATGAAAAGTGATGCATCCATGCATAATCCTTTTACTTTCAAAGATGAAGGCCCTATATCTGGACACAGTCTAACCCAGATAAAGAGACCAGTCTCACCAGTATCCAGTCGAGTCTCTATGAGGAGTGATGCGTCCATGCACAACCCTTTTACCTTCAAAGATGGAGGCCCCTCATCTGAACACAGGCTAATGCAGAAAAAGAGACCAGATTCAGCAGTATCCAGTCGAGTCTCTATGAAAAGTGATGCATCCATGCATAATCCTTTTACTTTCAAAGATGAAGGCCCTATATCTGGACACAGTCTAATCCAGATAAAGAGACATCATCCTTTTACATTCAAAGATGAAGCGCCCTCATCTCGACCCAGGCGTGAATCTTCATCTGCTGAAACTGAAGTACAGAAGAGATGCAAATTTCATCTGATAAAGAAGTTTCAGCATGTACATGAGGTGATAAAAAACCAGGCAAACCAAATACGTCttaatgagatctacacagagctctacatcacagaagGAGACAGTGGAAaagtcaataatgaacatgaggtgagacagattgaggcAGCATCCAGGAGAGCAGCAACAGAGGAAACACCAATCAAATGCAATGACATCTTTAAGCCCTTATCTGAAGAAGACAAACCCATCAGGAGTGTTCTGACAAAGGGAGTCGCTGgcattggaaaaacagtctctgtgcagaaatTCATTCTAGACTGGGCTGAAGGGAAAACAAATCAGGACATTCATCTCATATTTCCACTTCCTTTCAGAGAGCTCAACTTGATGAAGGATCAAACACTAAGCCTGATGGAGctccttcatttcttttcaaagGAGATAAACGAAACAAACATTTCCAGCTTGGGCAAAgttctgttcatttttgatGGTTTGGATGAGTGTCGTTTTCCTCTGGATTTCCAGAACACagtgagattgtgtgatgtaACTGAATCAGCATCAGTGCATGTGCTGCTGATAAACCTGATCAAaaggaatctgcttccctctgctctcatcTGGATCACCTCCCGACCAGCTGATCAAATCCCCTCGGAGTGTGTTGATCGAGTCacagaggtacgagggttcAATGACCCACAGAAGGAGGAATatttcaggaagaggatcagtgatcagagcctgagCAACAGAATCATCACACACCTGAAGTCAttaagaagcctctacatcatgtgccacatcccagtcttctgctggatttcagccactgttctagagagaatgttgggtgaagcagagagtggagagatccccaagactctgactcaaatgtacacacacttcctcatcaTTCAGACAAACATCATAAAGAAAAAGTACACAAAGAACCAAGAGGCAGATAAGGAACTTGTTCTGAAACTGGGTAAACTGGCTTTTCAGCAGCTGAGGAAAGGCAACCTGATCTTCTACGAGGAAGACGTGATGgtgtgtggcattgatgtgAAAGAAGCATCAGTGTATTcaggtgtgtgtacacagatcttcagagaggagtttgggcttcaccagAGTAAAGTGTACTGCTTTGTTCATCTGAGCATTCAGGAGCACCTCGCAGCTCTATATGTGCACCTGACGTTCATGGCCGAAAAGAGAAATGTTCTTAAAAAGCCAATATTGCCGATATTGAGGCTGAAAGTGAAGATCTCAGATGTACACAAGAGTGCTGTAGATCAGGCTTTACAGAGTAAAAATGGACATATGGATCTTTTCCTTCGCTTTCTTCTGGGTCTCTCCCTGGAGTCTAATCAGATCCTCCTACAAACCGTAGTGACACAGACAGGAAGTAGCTCCCACAGTTACCAGGAAACAGTTTattacatcaaggagaagatcagagAGAATCCCTCaacagagaaatccatcaatctgttccactgtctgtaTGAACTggatgatcattctctagttgAGGAAATCCAACACTACCTGCAATCTGGAAATTTACAACAAATTGAACTTTCACCTTCTCAGTGGTCagctgtggtgtttgtgttactggcATCAGTGCAGGAGCAGGATGTGTTTGTTCTTAATAAATATACCAACAAACACTGTACATCAGACGAGGTTATTCTGAAACTCCTGCCTGTGGTTGCAGCATCCAGAAAAGCTGATTTTAAAAGTTGTGGCCTAAATGGGAAAAGTTGTACAGCTTTGGCCTCAGTGCTCAGCTCTGAATCCTCCaatctgagagaactggatctgtctaGAAGTGAAGtcagagactcaggagtgaagcgtctctctgctggactggagaatcctcactgtatactggagacactgaggttgtgtgattgtgatATCTCAGATAAAGGCTGTGatgctctgacttcagctctgagatcaaacccctcacacctgagagtaCTGGATCTGTCTTGGAATAAAAtcagagactcaggagtgaagtgtctctctgctgtactggagaatcctcactgtaaactggagacactgaggttgtttAACTGTGGTGTCTCCGATGAAGcctgtgctgctctgacttcagctctgagatcaaacccctcacacctgagagaactggatctgtctaAGAATAAGctcagagactcaggagtgaagcaaCTCCTCAGTCTTAAACTACAGGACTTGAGGGTGTGAGGTATTTTCATCTGATGCAGATTCCAGagaatatgtttttaatgaaatgtgctCGACTCTCAGCGGCATTTcctggacattttttttctcacactgggaaataatctgaattaaatgtaatacatttccACAAAGTGTAATTGCAGACAGTGTGTCAGTGATGTACAGAATCACTTCATTTGTAAGATATATTACAGAGATTAATAGAgtgaaagggggattatggagagaataatgtctgtacatcagaaatatgtatgaaataCTTGTTTCAGACtcgaaaacagagaaaaagaagaacctTCTCCATTTTCCTATGCCCAAATTTTCTGGACTATTAGGGCATTTAAGGTctttgtggtttttgagatgtagttggaatggacattttgctgaaacctgtaaACCCTGGTTAATAATATGACACAGCTGAAGGTAAAGTCTAAACCCACTCGTAACAAGCTGCGagactgtacgctggatgactgtaAATTGTCGAGTCTCAactgccttttatggagttgcTGTAAAAATCTGCTCCActaaaatctatggtcatgagctgcTGCTGCGTGTAGCTGTGATTCTTCATGCATCATAGGACTTTACAGAGTGGTGTTGCAGCGCTACTATTATCAGCAATAAGCACTTACTGAAGctcaattaattatttttattactacacAATTCCACAGTTATACACTACAGAATCCGGACATCATGGCAGAACTCAGGTTCTGGTTAAGGTTCTAGTTGCTCTGGTCTTCACTTCAGCCCATGTCTTCCACCATTCTACCCCTCTATCACATCATCTGGTTGGAAGACTCTAAAAGAGCTCACCATGGCTGAAGCAGTGACTATTTACTCGACAAGTTCACTATTTACTCAGATGCTTAACTTGGGCATTGTTGAACAAAGTGTGATAGTgtgaaagtttattttttactagAACTTCTGTATCTTCTGTAACTCAAAATGTAGCTATTATaagtgtgattatatagtgacATGTATGAGTACAGTATAATACAGTGGAAATATTATGTTGTGACAGGGAgtcaaaagtgaagccaaaatgtctctgaggccctctagtgacTGGCTGCAGTACAGTTTTTAACCCTGCCCATTTCCATGAAAGGTGtcagacttccattataagttaCATCTCCACAAATATTTTCAGGAAtagtgttctgtcatttttacaagttcagtTGACCCTGATATCTTCCTTAAGGTAAATGCATTTTAGAGGAGTTATTtggtaacaaataaataaaagggtgtggttgatgaggtgattgacagttttggacATGACAGTCGAGCCTAatgaacatgcacacactttccaacacacacctgaagttCTTGACAGTTTTGTAGCAAAACCATGTCTTGTTCTGCTATAAACTCTTCTAACTCTTGCAGTTTTTCTGGTATGTTGCTGtttgatgtctaagctagctCATTGTACTGATATAACTAGGAAACGAACGTGAGTGAGCGAAATGACAGCATAAACCAaggcagctaacactagctaaattAATCTCAATGAAGCTGCTCCCAAGCAACACATGAAGCTCTCCTGGTTTCACTACATCAGTGTGGTCGGTGTTCTGTGCAGTAAATCGCCACCAGATATGGGAGGTCATTCCACCCAATCCTGCAATTATCACTATCATTCCCAGTATGAGCAAATGAATTCCCCCATAAGGACTATGGATTCATTAGTGTATGGAGTAACCTGGCCCACCTTCTATAAGAAGGTTAAACACTCCTAACTGCTATTGGGTGCATAAGCACAAACAACAGTCAGAAGTTTCTTTCCTGAGACTTGAAATCTCATGGAGATGACCTTCTTGTCCACTGGGAAAAACGCCAATTTCAAGGCCCCAGCCCAAGACTAGTGAGTATCTCCACACCCGCCTGAGACCTATCTAATGTCGGACCATGCAGAATGGTTTTAGTAGTGTACTGGTTAAAAATAGGACTTAaactttagaaaaataaaattatgaagGATGTCTTTAACAAcctaaaatgcacacacaaaaatactaGTAACTCATACACACGTAACTATACAAAGAACTTTCTGAGGAACCCTTGGATAACTCTAAGAGCTTAAATACTAAGTGATTATTGTAATAGTATTTCTTTAGGTTATGTATGAAtcttacttttgtttttaattttctactttttccaaaatactatttcatgttcattttttcagtgtacactTCCACTTATATTTGCTTAATTCTGGGTTACAAAAGTTACACATGTAGAAAAGCGTGTTTGTGTATCCATCCTTCTCTCACACTATCACTTTAAACACACTGTTCAACTGTACAGTTTACAAGAAAGGTAAGATTTAAATTGACGTAAGAACAGTGAATGCCAGAATTCtcaaaaattaatcaacaagtAAAACATGGCCACTGCTTCAGCCATGGTGGTCTCTTTTGGAGTCTTTCAGACAGATGATGTGATAGGGTGGTAGGGTGGCATGGCAGAAGACGGGGGCTGAAGTGTAGACTAGAGAAAGTGTGCAATTAGTGACCTCTACTGGAACCTTAACCAAAACCCTGTTACTCAAAACACTCTATTGAGtggatatttaaaataatgataataataataattgtacatATGTCTAACAGTATGCCATTTTGGAATGAAATGATAAGGGGTGTGTGTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577080.1 lncRNA upstream 6051 2201780 ~ 2203741 (+) True LOC117595895
TU398980 lncRNA upstream 225296 1965976 ~ 1984496 (+) False G336849
TU398979 lncRNA upstream 225296 1982429 ~ 1984496 (+) True G336849
TU398494 lncRNA upstream 366822 1842589 ~ 1842970 (+) True G336482
TU398493 lncRNA upstream 367256 1821132 ~ 1842536 (+) True G336481
XR_004577082.1 lncRNA downstream 1762 2242185 ~ 2259536 (+) False LOC117595896
TU399175 lncRNA downstream 3070 2243493 ~ 2244230 (+) True G336991
XR_004577081.1 lncRNA downstream 5517 2245940 ~ 2259536 (+) True LOC117595896
TU399149 lncRNA downstream 24097 2264520 ~ 2288884 (+) False LOC117595892
TU399240 lncRNA downstream 156680 2397103 ~ 2397302 (+) True G337052
XM_026945946.2 mRNA upstream 46269 2156555 ~ 2163523 (+) True LOC113546187
XM_034298463.1 mRNA upstream 66770 2074883 ~ 2143022 (+) True rims2b
XM_026946068.2 mRNA upstream 143882 2059332 ~ 2065910 (+) True cthrc1a
XM_026946066.2 mRNA upstream 170745 2026407 ~ 2039047 (+) True mc5ra
XM_034298840.1 mRNA upstream 206458 1991814 ~ 2003334 (+) True rnmt
XM_034298843.1 mRNA downstream 19833 2260256 ~ 2351749 (+) True LOC117595892
XM_034298846.1 mRNA downstream 61722 2302145 ~ 2340261 (+) True LOC113546301
XM_034298847.1 mRNA downstream 117705 2358128 ~ 2392537 (+) False LOC113546300
XM_034298848.1 mRNA downstream 117705 2358128 ~ 2388198 (+) False LOC113546300
XM_034298643.1 mRNA downstream 207793 2448216 ~ 2453296 (+) True LOC117595862
TU398943 other upstream 263926 1876274 ~ 1945866 (+) True G336822
TU398432 other upstream 550333 1657317 ~ 1659459 (+) True G336433
TU398302 other upstream 874262 1269809 ~ 1335530 (+) False G336334
TU398322 other upstream 882285 1325816 ~ 1327507 (+) True G336350
TU398245 other upstream 1073685 1132988 ~ 1136107 (+) False mllt11
TU399169 other downstream 76602 2317025 ~ 2321417 (+) False LOC113546301
TU399163 other downstream 117693 2358116 ~ 2370076 (+) False LOC113546300
XR_004577078.1 other downstream 117705 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other downstream 117705 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other downstream 117705 2358128 ~ 2392375 (+) False LOC113546300

Expression Profile