Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003403662.2 |
| length | 932 |
| lncRNA type | inter_gene |
| GC content | 0.40 |
| exon number | 3 |
| gene id | LOC113536151 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047617.1 |
| NCBI id | CM018563.1 |
| chromosome length | 20335669 |
| location | 9174943 ~ 9181214 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU403584 | lncRNA | upstream | 26650 | 9147811 ~ 9148293 (+) | True | G340596 |
| TU403585 | lncRNA | upstream | 33798 | 9140439 ~ 9141145 (+) | True | G340597 |
| TU403582 | lncRNA | upstream | 35395 | 9137699 ~ 9139548 (+) | True | G340594 |
| TU403588 | lncRNA | upstream | 39227 | 9135049 ~ 9135716 (+) | True | G340600 |
| TU403581 | lncRNA | upstream | 40764 | 9133044 ~ 9134179 (+) | False | sgce |
| TU403683 | lncRNA | downstream | 65268 | 9246479 ~ 9247048 (+) | True | G340687 |
| TU403973 | lncRNA | downstream | 376486 | 9557697 ~ 9565526 (+) | False | LOC113536134 |
| XR_003403660.2 | lncRNA | downstream | 376527 | 9557738 ~ 9560373 (+) | True | LOC113536134 |
| TU404020 | lncRNA | downstream | 446577 | 9627788 ~ 9669228 (+) | True | G340967 |
| TU404103 | lncRNA | downstream | 547717 | 9728928 ~ 9730969 (+) | True | G341038 |
| XM_034298368.1 | mRNA | upstream | 41385 | 9119014 ~ 9133558 (+) | False | sgce |
| XM_026929620.2 | mRNA | upstream | 41385 | 9119015 ~ 9133558 (+) | True | sgce |
| XM_034298369.1 | mRNA | upstream | 41385 | 9119016 ~ 9133558 (+) | False | sgce |
| XM_026929622.2 | mRNA | upstream | 41385 | 9119017 ~ 9133558 (+) | False | sgce |
| XM_026930225.2 | mRNA | upstream | 121613 | 9034462 ~ 9053330 (+) | True | pdk4 |
| XM_026929681.2 | mRNA | downstream | 43393 | 9224604 ~ 9229638 (+) | True | bet1 |
| XM_026929404.2 | mRNA | downstream | 70895 | 9252106 ~ 9255479 (+) | True | tfpi2 |
| XM_026930171.2 | mRNA | downstream | 82550 | 9263761 ~ 9315951 (+) | True | calcr |
| XM_034298534.1 | mRNA | downstream | 399704 | 9580915 ~ 9594532 (+) | True | LOC113536235 |
| XM_034298535.1 | mRNA | downstream | 399704 | 9580915 ~ 9594532 (+) | False | LOC113536235 |
| TU403493 | other | upstream | 259099 | 8912928 ~ 8915844 (+) | True | sem1 |
| TU403492 | other | upstream | 259099 | 8912973 ~ 8915844 (+) | False | sem1 |
| TU403100 | other | upstream | 889739 | 8282960 ~ 8285204 (+) | True | G340208 |
| TU401977 | other | upstream | 2457797 | 6711015 ~ 6717146 (+) | True | G339324 |
| TU401948 | other | upstream | 2559071 | 6604657 ~ 6615872 (+) | False | mturn |
| TU403677 | other | downstream | 43429 | 9224640 ~ 9229436 (+) | False | bet1 |
| TU404551 | other | downstream | 1293272 | 10474483 ~ 10481970 (+) | True | G341451 |
| TU405030 | other | downstream | 2111113 | 11292324 ~ 11294030 (+) | False | smim12 |
| TU405031 | other | downstream | 2111113 | 11292324 ~ 11294356 (+) | True | smim12 |
| XR_004577055.1 | other | downstream | 2628898 | 11810109 ~ 11815273 (+) | False | sostdc1b |
