Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003403669.2 |
| length | 483 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 3 |
| gene id | LOC113536203 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047617.1 |
| NCBI id | CM018563.1 |
| chromosome length | 20335669 |
| location | 5975872 ~ 5981732 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU401536 | lncRNA | upstream | 120442 | 5854658 ~ 5855430 (+) | True | G338961 |
| TU401392 | lncRNA | upstream | 247566 | 5727178 ~ 5728306 (+) | True | G338842 |
| TU401393 | lncRNA | upstream | 247850 | 5727178 ~ 5728022 (+) | False | G338842 |
| TU401352 | lncRNA | upstream | 449263 | 5525040 ~ 5526609 (+) | True | G338814 |
| TU401337 | lncRNA | upstream | 543608 | 5431849 ~ 5432264 (+) | True | G338799 |
| TU401647 | lncRNA | downstream | 6079 | 5987811 ~ 5988492 (+) | True | G339055 |
| TU401728 | lncRNA | downstream | 135017 | 6116749 ~ 6128284 (+) | True | G339126 |
| TU401768 | lncRNA | downstream | 192589 | 6174321 ~ 6175597 (+) | True | G339159 |
| TU401777 | lncRNA | downstream | 218761 | 6200493 ~ 6201623 (+) | True | G339167 |
| XR_004577070.1 | lncRNA | downstream | 331753 | 6313485 ~ 6319774 (+) | True | LOC117595885 |
| XM_026929973.2 | mRNA | upstream | 31648 | 5927706 ~ 5944224 (+) | True | slc39a4 |
| XM_034298742.1 | mRNA | upstream | 249477 | 5704672 ~ 5726395 (+) | True | zgc:63863 |
| XM_034298744.1 | mRNA | upstream | 254310 | 5704671 ~ 5721562 (+) | False | zgc:63863 |
| XM_026929890.2 | mRNA | upstream | 301681 | 5669693 ~ 5674191 (+) | True | cfap20 |
| XM_026929889.2 | mRNA | upstream | 302883 | 5669692 ~ 5672989 (+) | False | cfap20 |
| XM_026930094.2 | mRNA | downstream | 118814 | 6100546 ~ 6109043 (+) | True | LOC113536255 |
| XM_026930200.2 | mRNA | downstream | 130369 | 6112101 ~ 6116707 (+) | True | LOC113536325 |
| XM_026929397.2 | mRNA | downstream | 206437 | 6188169 ~ 6197615 (+) | True | cdca7b |
| XM_026929989.2 | mRNA | downstream | 291215 | 6272947 ~ 6275012 (+) | True | sp8a |
| XM_026929529.2 | mRNA | downstream | 352257 | 6333989 ~ 6343909 (+) | True | LOC113535938 |
| TU400576 | other | upstream | 1620843 | 4352522 ~ 4355029 (+) | True | G338163 |
| XR_004577078.1 | other | upstream | 3583394 | 2358128 ~ 2392478 (+) | False | LOC113546300 |
| XR_004577077.1 | other | upstream | 3583400 | 2358128 ~ 2392472 (+) | True | LOC113546300 |
| XR_004577079.1 | other | upstream | 3583497 | 2358128 ~ 2392375 (+) | False | LOC113546300 |
| TU399163 | other | upstream | 3605796 | 2358116 ~ 2370076 (+) | False | LOC113546300 |
| TU401842 | other | downstream | 357775 | 6339507 ~ 6343871 (+) | False | LOC113535938 |
| TU401948 | other | downstream | 622925 | 6604657 ~ 6615872 (+) | False | mturn |
| TU401977 | other | downstream | 729283 | 6711015 ~ 6717146 (+) | True | G339324 |
| TU403100 | other | downstream | 2301228 | 8282960 ~ 8285204 (+) | True | G340208 |
| TU403493 | other | downstream | 2931196 | 8912928 ~ 8915844 (+) | True | sem1 |
