RNA id: XR_003404701.2


Basic Information

Item Value
RNA id XR_003404701.2
length 854
lncRNA type inter_gene
GC content 0.55
exon number 3
gene id LOC113546290
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 2926524 ~ 2995271 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCACCCCGCCTTTTTCCTTTACGATTGGCTGGTTGGGTTATTTTTCCGCGCTCGGATTGGCCACTCGAAATCGCTCGGCTCTGGATTGGACAATCTGGGGAACGCAGGAGGCGGGACGTTCCTCTAAGCCAATAAGCGGAGCAGGAGCTGTTGGCTTCGCGGGGGCTCGAGCGCgttctctcgcgctctctctctctctctcgcgtaCTTGTGTACGTTCTTTCGGTCGTCTATTTATAGAACCCCACAATCGGGAACCACGTGACACGGGGGGAGTGACGTCACTAATGTTGTCGTCGGTGGAGGAGCCGCAAAcatggaggaggagagagagagaaagagagagagtgagagagagagagtgagagagagagagagacagagttgtggccggaaaaaaaatgttatacttTTCTCCTTTAACGAAAAGCGATAAATGAGGAAGAAAGAGCGGCAGTGAAGACAGGAAATAAAAGTGTGCACGAGCTTCGGGAAGCCAAACAGTCTCCAGtgtgtgatcATCACAGCCGCTCTACTCAGATCTGCAGTCATGGCTGACAGCGAGGACCCGCTGTAGACCCCCTGGCCTTCCAGAACCTcgtggaaacacacacacacacacacacacacacacacacacacacacacacacacacgcactcccTCTGGAGATCGTTTTCACCTTGCCTGAGAACGGACCTGTGGAGCCAGAGGGGACGTGAGATCCATGAATTCATCCAACACTCCAGtggTGGAGGTGAAGAGCTCGCTGCCCTCGGGCATGCAGAGTCCGGTGGCTGGAGGTGTCGGTGAACAGGGCGgcggtggaggaggaggaggaggaggtggtgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU399362 lncRNA upstream 55615 2870683 ~ 2870909 (+) True G337138
TU399360 lncRNA upstream 63556 2862527 ~ 2862968 (+) True G337136
TU399353 lncRNA upstream 83649 2842664 ~ 2842875 (+) True G337129
TU399352 lncRNA upstream 84069 2841356 ~ 2842455 (+) True G337128
TU399351 lncRNA upstream 91968 2834271 ~ 2834556 (+) True G337127
TU399423 lncRNA downstream 23839 3019110 ~ 3019410 (+) True G337194
TU399424 lncRNA downstream 38573 3033844 ~ 3034394 (+) True G337195
TU399433 lncRNA downstream 100726 3095997 ~ 3102191 (+) True G337197
TU399479 lncRNA downstream 217240 3212511 ~ 3299308 (+) True G337233
TU399552 lncRNA downstream 494582 3489853 ~ 3491029 (+) True G337304
XM_026946102.2 mRNA upstream 36381 2845407 ~ 2890143 (+) True tanc2a
XM_026946022.2 mRNA upstream 184930 2671258 ~ 2741594 (+) True wnk4b
XM_034298396.1 mRNA upstream 266246 2607346 ~ 2660278 (+) False arhgap27l
XM_034298751.1 mRNA downstream 6 2995277 ~ 3023586 (+) True hdac5
XM_034298756.1 mRNA downstream 36377 3031648 ~ 3039255 (+) True lsm12a
XM_034298407.1 mRNA downstream 46097 3041368 ~ 3067972 (+) True vwa3a
XM_034298408.1 mRNA downstream 46097 3041368 ~ 3067972 (+) False vwa3a
XM_034298410.1 mRNA downstream 46097 3041368 ~ 3063913 (+) False vwa3a
XR_004577078.1 other upstream 534046 2358128 ~ 2392478 (+) False LOC113546300
XR_004577077.1 other upstream 534052 2358128 ~ 2392472 (+) True LOC113546300
XR_004577079.1 other upstream 534149 2358128 ~ 2392375 (+) False LOC113546300
TU399163 other upstream 556448 2358116 ~ 2370076 (+) False LOC113546300
TU399169 other upstream 605107 2317025 ~ 2321417 (+) False LOC113546301
TU400576 other downstream 1357251 4352522 ~ 4355029 (+) True G338163
TU401842 other downstream 3344236 6339507 ~ 6343871 (+) False LOC113535938
TU401948 other downstream 3609386 6604657 ~ 6615872 (+) False mturn
TU401977 other downstream 3715744 6711015 ~ 6717146 (+) True G339324
TU403100 other downstream 5287689 8282960 ~ 8285204 (+) True G340208

Expression Profile