Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004576996.1 |
| length | 549 |
| lncRNA type | inter_gene |
| GC content | 0.51 |
| exon number | 3 |
| gene id | LOC117595810 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047617.1 |
| NCBI id | CM018563.1 |
| chromosome length | 20335669 |
| location | 8962937 ~ 8966727 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU403494 | lncRNA | upstream | 45137 | 8916606 ~ 8917800 (+) | True | G340517 |
| XR_004577075.1 | lncRNA | upstream | 71877 | 8875957 ~ 8891060 (+) | False | LOC117595890 |
| XR_004577073.1 | lncRNA | upstream | 71877 | 8876951 ~ 8891060 (+) | False | LOC117595890 |
| XR_004577074.1 | lncRNA | upstream | 71877 | 8880308 ~ 8891060 (+) | True | LOC117595890 |
| TU403270 | lncRNA | upstream | 103274 | 8850968 ~ 8859663 (+) | True | G340339 |
| TU403554 | lncRNA | downstream | 87673 | 9054400 ~ 9058481 (+) | True | G340574 |
| TU403587 | lncRNA | downstream | 161674 | 9128401 ~ 9131271 (+) | False | sgce |
| TU403581 | lncRNA | downstream | 166317 | 9133044 ~ 9134179 (+) | False | sgce |
| TU403588 | lncRNA | downstream | 168322 | 9135049 ~ 9135716 (+) | True | G340600 |
| TU403582 | lncRNA | downstream | 170972 | 9137699 ~ 9139548 (+) | True | G340594 |
| XM_026929430.2 | mRNA | upstream | 47091 | 8912980 ~ 8915846 (+) | False | sem1 |
| XM_026929967.2 | mRNA | upstream | 88495 | 8872595 ~ 8874442 (+) | True | dlx5a |
| XM_026929455.2 | mRNA | upstream | 119819 | 8839251 ~ 8843118 (+) | True | chrac1 |
| XM_026929643.2 | mRNA | upstream | 138112 | 8820384 ~ 8824825 (+) | True | c23h6orf62 |
| XM_034298508.1 | mRNA | upstream | 147968 | 8778687 ~ 8814969 (+) | False | ripor2 |
| XM_026930225.2 | mRNA | downstream | 67735 | 9034462 ~ 9053330 (+) | True | pdk4 |
| XM_034298368.1 | mRNA | downstream | 152287 | 9119014 ~ 9133558 (+) | False | sgce |
| XM_026929620.2 | mRNA | downstream | 152288 | 9119015 ~ 9133558 (+) | True | sgce |
| XM_034298369.1 | mRNA | downstream | 152289 | 9119016 ~ 9133558 (+) | False | sgce |
| XM_026929622.2 | mRNA | downstream | 152290 | 9119017 ~ 9133558 (+) | False | sgce |
| TU403493 | other | upstream | 47093 | 8912928 ~ 8915844 (+) | True | sem1 |
| TU403492 | other | upstream | 47093 | 8912973 ~ 8915844 (+) | False | sem1 |
| TU403100 | other | upstream | 677733 | 8282960 ~ 8285204 (+) | True | G340208 |
| TU401977 | other | upstream | 2245791 | 6711015 ~ 6717146 (+) | True | G339324 |
| TU401948 | other | upstream | 2347065 | 6604657 ~ 6615872 (+) | False | mturn |
| TU403677 | other | downstream | 257913 | 9224640 ~ 9229436 (+) | False | bet1 |
| TU404551 | other | downstream | 1507756 | 10474483 ~ 10481970 (+) | True | G341451 |
| TU405030 | other | downstream | 2325597 | 11292324 ~ 11294030 (+) | False | smim12 |
| TU405031 | other | downstream | 2325597 | 11292324 ~ 11294356 (+) | True | smim12 |
| XR_004577055.1 | other | downstream | 2843382 | 11810109 ~ 11815273 (+) | False | sostdc1b |
