RNA id: XR_004577073.1


Basic Information

Item Value
RNA id XR_004577073.1
length 1435
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id LOC117595890
representative False

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 8875957 ~ 8891060 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGATGCCTTTCAGTATTAAAAGTGGTAGAAAATTACAGGTAATTATCTTTGACGGTAAAAACGCTGTAATCAGCGGGCTACATCAAAAATTACCCTAATTATGTCTGCATTTATgagaataggaaaaaaaaccttcacttGGATAAAACCCATAAATTGTCCCAAATATCTCCTTCATATTGAACGAGACTGCAGCTGGGTGCTTTGTTCGGGATCGATCCTGTGGCGAATGGCATTCAGCGTTTCGCACAtcaagacagggagagagggggaaaaacatTTTGTCAATACTGTAATGATTGAGACAGAGTAGATGGACAAGATGCGGTTCTGTATTATAGGAAAAACTCGATGAGAGACGACCAACTATggGAGCCTGATTTGAGATGTTCTTCTGTTGTTGATTGCTCAACATTGAGAGATATTTCAAGGGCTCAGAGAGCTGACTGAGGAGAAGTCTTTTGAAAGAGCAAAGCCCGATGACCAGGCGAAGGAAATCAAGGCTCCCTAGTGTGTCGCCTTAGCAACGGGGGAAAATTAGCATTGACTTCCGAGCAAGCCTACAAAACTAGGCTTCAGGGTATTTTTTACATCTTGAAAAGTGACAATCAAAGAAGATCTAAAGACACGCTTCCACTTCCATTTATATTGAaatcagtttctttcttttttccgcTGCCCGAACACAAAAAGTCttaatgtatgtatttttgctcattttactGTGTTGTGCAGTTTCCCCGCAATGCCCCCTTGCTCATGTTTGCCTCCCGCCGTGGCAAACAGAACACGTCTATGATAGTGAATGCATTTCAGAGTACTTCCCAACATGAACTAGAGCTGACACTGGCTTCCTCATTCGCAGGCATGGAATTCAGCTCTCATGATTGCCAACACGCTTAATGATAGCGTCTCCTAGAGTCACAGAAGTATCACACTGAtgcaccatctctctctctctccctctcttcatcACATTGCAGGGAATTCAGCGGCGTCCAAACGGCAGAACCCGCAAGTAAGCCCATCAGGAGCCGTTATTCAGAGAAATGAAGTGCAGATTGTTTGTGCAGACGCATGAAGCTGCTTGGTGTATCCTCTCATCACAAGCGAGCTGCACTGCCATGTAGGAACAAGCAGGAATACATTAAAAGGTAATGAGAGATCAGTCAGAAGAGGGTCATGCAGGGGCACTGTTTGGCATCGCCATTGCCGGAGAGAGCTTTCAGCGTGACGGCCTTGTTGTCTCTGTTGAGGAGCCAGAAGGGGTGGAGTTCAACAATGTTCCTCATGGCAACAGTTGCTAAGCCTTGCTTCTTGTTGATGTGGTTATTTGTTAATCAAAATTGGGTGCAAGAGATTAGCAAgtattgtatatatgtgtgttatttcatatACTAACGATGActtgaataaatattttcattcaagACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU403270 lncRNA upstream 17288 8850968 ~ 8859663 (+) True G340339
TU403267 lncRNA upstream 31267 8844274 ~ 8845684 (+) True G340336
TU403206 lncRNA upstream 208169 8668579 ~ 8668782 (+) True G340297
TU403162 lncRNA upstream 259910 8613486 ~ 8617041 (+) True G340257
TU403151 lncRNA upstream 385037 8489679 ~ 8491914 (+) True G340248
TU403494 lncRNA downstream 25546 8916606 ~ 8917800 (+) True G340517
XR_004576996.1 lncRNA downstream 71877 8962937 ~ 8966727 (+) True LOC117595810
TU403554 lncRNA downstream 163340 9054400 ~ 9058481 (+) True G340574
TU403587 lncRNA downstream 237341 9128401 ~ 9131271 (+) False sgce
TU403581 lncRNA downstream 241984 9133044 ~ 9134179 (+) False sgce
XM_026929967.2 mRNA upstream 2509 8872595 ~ 8874442 (+) True dlx5a
XM_026929455.2 mRNA upstream 33833 8839251 ~ 8843118 (+) True chrac1
XM_026929643.2 mRNA upstream 52126 8820384 ~ 8824825 (+) True c23h6orf62
XM_026929830.2 mRNA upstream 61982 8778213 ~ 8814969 (+) False ripor2
XM_026929430.2 mRNA downstream 21920 8912980 ~ 8915846 (+) False sem1
XM_026930225.2 mRNA downstream 143402 9034462 ~ 9053330 (+) True pdk4
XM_034298368.1 mRNA downstream 227954 9119014 ~ 9133558 (+) False sgce
XM_026929620.2 mRNA downstream 227955 9119015 ~ 9133558 (+) True sgce
XM_034298369.1 mRNA downstream 227956 9119016 ~ 9133558 (+) False sgce
TU403100 other upstream 591747 8282960 ~ 8285204 (+) True G340208
TU401977 other upstream 2159805 6711015 ~ 6717146 (+) True G339324
TU401948 other upstream 2261079 6604657 ~ 6615872 (+) False mturn
TU401842 other upstream 2533080 6339507 ~ 6343871 (+) False LOC113535938
TU400576 other upstream 4521922 4352522 ~ 4355029 (+) True G338163
TU403493 other downstream 21868 8912928 ~ 8915844 (+) True sem1
TU403492 other downstream 21913 8912973 ~ 8915844 (+) False sem1
TU403677 other downstream 333580 9224640 ~ 9229436 (+) False bet1
TU404551 other downstream 1583423 10474483 ~ 10481970 (+) True G341451
TU405030 other downstream 2401264 11292324 ~ 11294030 (+) False smim12

Expression Profile