RNA id: TU424532


Basic Information

Item Value
RNA id TU424532
length 1304
RNA type TUCP
GC content 0.50
exon number 11
gene id ccne1
representative False

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 344062 ~ 351769 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aagtaaatgttttatatcaGAGGCAGGAGTCAGAGAGGAGTGATGGCGTTGTAGGATGAATTTAAACTTCCggaagtgtttattttattgttaaagttttaatattacaagtttatttatttcttttttaaaaagcatgtctGTTTTTGAGTCGCGCGCCGCGAGTTTGCGCAGTTTATAAAGGCAAAGGCGCAAAATGAGGCTGAGAGCAGAGCAGCTAGGAGAggaacacacaccataacacacaccataacacacacacacacggggaaTAAGGAGCACACcttcctgaacacacacaggatcacaggcatgatgaagatgatgaagatgaagatggtGTGTGAAAGATCTTAACTTCTCTGCATCTGAAGTTTTTCCTGCACGCGCGGTTTGGAGGCTCTGTGAGGTGTGGAGACACAGCCCTGTGGATATAATGCCCAgtaagagtgtGTTAAACACACAAGTGAACAGCAGAACGGATGAAGCTCCTAAACCCAGCTCGGCTCGCTCCAGGAAGAGGAAAGCAGATGTTGCTATTCACTTACATGATCCGGATGAGGAAATTACAGAGGCGCAGACGAGAAAGAAGCCGTGTCCGCCCCAGGAGACGTGCCGGGATCAGACGGCGGCCTCCTCTCCACGCCAGGCGGATAAACCGGTTGGAATCGGCAGCGTGGGATTCACACACTACGCCAGCAGGAGTGTTTTCGTCACCCCGACACGGCCCTCGCCCCTGCCTGCCCTGTGTTGGGCGAGTAAAGACGACGTGTGGAGCAACCTGCTGAAGAAAGATAAACTTTACCTCCACAATGTGCATGTGATGGAGAGACACCCCAACCTGCAGCCCAAAATGAGGGCCATTCTGCTGGACTGGTTAatcgaggtgtgtgaggtgtatAAACTCCACAGGGAGACGTTTTATTTAGGTCAGGATTATTTCGATCGCTTCATGGCCACACAGAAGAACGTGCAGAAGTCCACGCTGCAGCTCATCGGCATTTCCGCTCTCTTCATCGCCGCTAAGATGGAGGAGATTTATCCTCCTAAAGTGCACCAGTTTGCGTATGTGACGGATGGAGCGTGTACGGAGGAGGAGATCCTCAGCATGGAGGTCATCATCATGAAGGAGCTGAACTGGAGTCTGAGTCCGTTAACGCCGGTGTCGTGGCTGAACATCTACATGCAGATGGCGTATCTGAAGGAGTTCACTGAAGTTCTCATGCCACAGTTTCCTCAGACCACGTTCGTACAGATCGCTGAGctgttggATTTGTGCATTCGGGGTGTGAGGAGTCTGGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424536 lncRNA upstream 57591 284243 ~ 286527 (+) True G358312
TU424539 lncRNA upstream 69495 273454 ~ 274623 (+) True LOC113525132
XR_003402628.2 lncRNA upstream 69603 273464 ~ 274515 (+) False LOC113525132
TU424527 lncRNA upstream 163968 179938 ~ 180150 (+) True G358305
TU424526 lncRNA upstream 164804 179026 ~ 179314 (+) True G358304
TU424576 lncRNA downstream 30554 379230 ~ 424643 (+) True G358344
TU424568 lncRNA downstream 42657 391333 ~ 394621 (+) True G358338
XR_004577246.1 lncRNA downstream 50671 399347 ~ 400856 (+) True LOC117596071
TU424569 lncRNA downstream 99405 448081 ~ 452014 (+) False cmtm4
TU424570 lncRNA downstream 99405 448081 ~ 452014 (+) True cmtm4
XM_026911576.2 mRNA upstream 5477 330987 ~ 338641 (+) True si:ch211-260e23.9
XM_026911574.2 mRNA upstream 20788 320536 ~ 323330 (+) True plekhf1
XM_026911593.2 mRNA upstream 37355 299673 ~ 306763 (+) True LOC113525130
XM_034299454.1 mRNA downstream 14209 362885 ~ 376246 (+) True nae1
XM_034299617.1 mRNA downstream 57303 405979 ~ 420868 (+) True dync1li2
XM_034299618.1 mRNA downstream 57303 405979 ~ 420736 (+) False dync1li2
XM_034299619.1 mRNA downstream 78197 426873 ~ 448589 (+) False cmtm4
XM_026937706.2 mRNA downstream 117864 466540 ~ 476972 (+) True tk2
TU424577 other downstream 93 348769 ~ 351769 (+) False ccne1
TU424578 other downstream 93 348769 ~ 351769 (+) False ccne1
TU424579 other downstream 93 348769 ~ 351769 (+) False ccne1
TU424567 other downstream 78220 426896 ~ 438886 (+) False cmtm4
XR_004577234.1 other downstream 1541898 1890574 ~ 1904591 (+) True LOC117596061

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00020153 True 667 lncRNA 0.45 5 NC_007127.7 40580500 ~ 40583150 (+)