RNA id: XM_034299453.1


Basic Information

Item Value
RNA id XM_034299453.1
length 2218
RNA type mRNA
GC content 0.49
exon number 13
gene id ccne1
representative True

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 344062 ~ 351769 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGACGTCACCCCGGTCACGCCCCTTTACCCGGCAAAAAGTAGGGAAAGTGTttataaagtaaatgttttatatcaGAGGCAGGAGTCAGAGAGGAGTGATGGCGTTGTAGGATGAATTTAAACTTCCggaagtgtttattttattgttaaagttttaatattacaagtttatttatttcttttttaaaaagcatgtctGTTTTTGAGTCGCGCGCCGCGAGTTTGCGCAGTTTATAAAGGCAAAGGCGCAAAATGAGGCTGAGAGCAGAGCAGCTAGGAGAggaacacacaccataacacacaccataacacacacacacacggggaaTAAGGAGCACACcttcctgaacacacacaggatcacaggcatgatgaagatgatgaagatgaagatggtGTGTGAAAGATCTTAACTTCTCTGCATCTGAAGTTTTTCCTGCACGCGCGGTTTGGAGGCTCTGTGAGGTGTGGAGACACAGCCCTGTGGATATAATGCCCAgtaagagtgtGTTAAACACACAAGTGAACAGCAGAACGGATGAAGCTCCTAAACCCAGCTCGGCTCGCTCCAGGAAGAGGAAAGCAGATGTTGCTATTCACTTACATGATCCGGATGAGGAAATTACAGAGGCGCAGACGAGAAAGAAGCCGTGTCCGCCCCAGGAGACGTGCCGGGATCAGACGGCGGCCTCCTCTCCACGCCAGGCGGATAAACCGGTTGGAATCGGCAGCGTGGGATTCACACACTACGCCAGCAGGAGTGTTTTCGTCACCCCGACACGGCCCTCGCCCCTGCCTGCCCTGTGTTGGGCGAGTAAAGACGACGTGTGGAGCAACCTGCTGAAGAAAGATAAACTTTACCTCCACAATGTGCATGTGATGGAGAGACACCCCAACCTGCAGCCCAAAATGAGGGCCATTCTGCTGGACTGGTTAatcgaggtgtgtgaggtgtatAAACTCCACAGGGAGACGTTTTATTTAGGTCAGGATTATTTCGATCGCTTCATGGCCACACAGAAGAACGTGCAGAAGTCCACGCTGCAGCTCATCGGCATTTCCGCTCTCTTCATCGCCGCTAAGATGGAGGAGATTTATCCTCCTAAAGTGCACCAGTTTGCGTATGTGACGGATGGAGCGTGTACGGAGGAGGAGATCCTCAGCATGGAGGTCATCATCATGAAGGAGCTGAACTGGAGTCTGAGTCCGTTAACGCCGGTGTCGTGGCTGAACATCTACATGCAGATGGCGTATCTGAAGGAGTTCACTGAAGTTCTCATGCCACAGTTTCCTCAGACCACGTTCGTACAGATCGCTGAGctgttggATTTGTGCATTCGGGGTTATGTATGTGTAGGGGTGGATGTGTCTCTGGTCCAAGAACTCATCATGAAGGTCTCTggggtgaagtggtgtgatgtggagcGCTGTGTGAGGTGGATGGTGCCATTTGCGATGGCGATACGTGAAGTTGGAAGCTCCTCCCAAAAAACGTTTAAAGGCATTCCAGCAGAGAACATGCACAACATCCAGagccacgccccctacctgGACTGGCTGGGAAAGGTACACTCTCATCAGCTGGAGGATTTGGAACATGGCCAGACCTCGCCCGTCCCGCCCGGAGTGTTGACTCCGCCCCCCAGCAGCGAGAAACCCGAGGACTCTTCGTCCTGACCGCTGCTCCGCTTCAGCtatgtggattgggacacgacCCACAGCCATGCTGTTCTCAGATCAGCTTTGAGAAACCTGCACAACTTTTTATTCTGATCTCTGCAGACTCCTAACCGCTTAATTCtgaatttttaaacatgtattatTGATCCACCGAGTCGCAGCCCGCCTACCGAATCCTCAGAGAGCCTCAGGGCCTGAATGCTGCTATAACGGAGGTGggacacacgcgcacacacacacacacacacacacacacacacacacacacacacacacaaaggattTTTGATGGATTAGATTTTATATTTCACACTTTCGGgggtgtttgtttgtgttaagGTGAATTATGCTATTTTTCTAAGGAAGGCCCAGGTCACCATGGAAACGGCTTTAAATCCTGTAGGACTgggattttattttgaaaatttttaTCCTCTGGTTGTATCCTGAGATTTTTAccaaaatgatctttttttaatgtcatgctgctactgttgtgtattttataaatctaaataaagcTCTAAATGCATACGCA

Function

GO:

id name namespace
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0051301 cell division biological_process
GO:0005634 nucleus cellular_component
GO:0019901 protein kinase binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K06626 CCNE; G1/S-specific cyclin-E1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424536 lncRNA upstream 57535 284243 ~ 286527 (+) True G358312
TU424539 lncRNA upstream 69439 273454 ~ 274623 (+) True LOC113525132
XR_003402628.2 lncRNA upstream 69547 273464 ~ 274515 (+) False LOC113525132
TU424527 lncRNA upstream 163912 179938 ~ 180150 (+) True G358305
TU424526 lncRNA upstream 164748 179026 ~ 179314 (+) True G358304
TU424576 lncRNA downstream 27462 379230 ~ 424643 (+) True G358344
TU424568 lncRNA downstream 39565 391333 ~ 394621 (+) True G358338
XR_004577246.1 lncRNA downstream 47579 399347 ~ 400856 (+) True LOC117596071
TU424569 lncRNA downstream 96313 448081 ~ 452014 (+) False cmtm4
TU424570 lncRNA downstream 96313 448081 ~ 452014 (+) True cmtm4
XM_026911576.2 mRNA upstream 5421 330987 ~ 338641 (+) True si:ch211-260e23.9
XM_026911574.2 mRNA upstream 20732 320536 ~ 323330 (+) True plekhf1
XM_026911593.2 mRNA upstream 37299 299673 ~ 306763 (+) True LOC113525130
XM_034299454.1 mRNA downstream 11117 362885 ~ 376246 (+) True nae1
XM_034299617.1 mRNA downstream 54211 405979 ~ 420868 (+) True dync1li2
XM_034299618.1 mRNA downstream 54211 405979 ~ 420736 (+) False dync1li2
XM_034299619.1 mRNA downstream 75105 426873 ~ 448589 (+) False cmtm4
XM_026937706.2 mRNA downstream 114772 466540 ~ 476972 (+) True tk2
TU424567 other downstream 75128 426896 ~ 438886 (+) False cmtm4
XR_004577234.1 other downstream 1538806 1890574 ~ 1904591 (+) True LOC117596061
TU425115 other downstream 1969403 2321171 ~ 2338758 (+) False c25h16orf87
TU425321 other downstream 2284521 2636289 ~ 2664941 (+) False igdcc4
TU426380 other downstream 3371258 3723026 ~ 3729877 (+) False cylda

Expression Profile