RNA id: TU424593


Basic Information

Item Value
RNA id TU424593
length 1588
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G358359
representative True

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 485735 ~ 487322 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gttcttacaaataattaatcaataataataaaatttaacttgttatttattaattgttaattgttgGACTGAGTTTGATTGAGGtgttatataaattattactcTCACGCAGCCTCaataagaatatatatttagGATTAATTCTGATTTTgtttcacaaaaaataaataaacagaaaactttacagaTCTTTGCACTACTCTTAATAAAGATACGacacagaaaacaacaacaacagaaaccaTATTTATCTGTATACACTGATTCGTTTCTTTAATGACGGCTACAGACACGCGAGTCGATAACAGAAATATTCCTCATCAGGAAACGTAACAACATTTAAACATCataaataacttttaataaGAGGTTCAGCGTCTACAAACACATTACTAGCTGCTCGAAATTTAACCGATTTGAAACGCTAACGTTAGAACACTTTCAGatttaaatatcataaaattCAAGCACACTTTTATAGAGgaaaaatacagttttgttCTTTAACAGTCAGAAAGAATTATAGCACACGTgtgatttatattattaaaatatatgcattatttaataatatttgtaaatagTGATTTATTGTGTCTCTGGATGATTTATTACTGATTAACTGTCTGTAGAAAAGGAGTAAAAATGTTCGCTAAAGTTACGTAGTGTGCATTAACTCACGATTCAGTAAGCTAGCTAGCGTTACACTGAGGggttatataacatttataatgtttataacgtttataatgtttagaatgtttataatgtttacatataatgaATGTGATTTATAGCATTTTGTTGCCTAGTTAGCATAGAACAGCTAATATGCTAAAAATACTCTGCTAGCATGACGATGTCTTGTGACACCAGCAGCTAGAATTAGCTTAAAAATCGTTTCTCAAGACGCCGGCATTTGCAAAACAAAGCAGATAAATCAGATAtcgttttaatttttatttcttttcgaTGTAAATTGatgttaatttcatttttactcaGAAGTTAGCTAATCTGCTAACATGAGATTAgctgttttacacatttttcatgtCCTTGCGTTTTAGCTTCATCTAAACTGACGTGAAAACATCCTACGTTTTTGctaaatttaaataacaaaccagtattttaatttttaaagaaaataaatagataaaaagagACTAGTGATAAATTTGATTGTTTGCTGATCTGTTAGCAAGTGTAGATATTTAAACGCATTAGTGAAATAATTCCACTGAATAAAaactttatagattttttttctgctttgttgACTTTTTGGTGAATTTCCTACAAATTAGCtgcagaagtaaaaaaaaaaaaaagtgttttaataaagtgttttatagaaaagactttaaaatgaattttaaacagCAGTCATtgagaaaaatccaaaaagaaTGTGCTTCTGgattagagagacagagagagagagagacagagaaagagagagagatacagatagagagagggggatagggaaagagagaaagacagacagagagagagagacagagagagagagagagagagagacagagagagagagagagagagagagagagagagagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424569 lncRNA upstream 33721 448081 ~ 452014 (+) False cmtm4
TU424570 lncRNA upstream 33721 448081 ~ 452014 (+) True cmtm4
TU424571 lncRNA upstream 33721 448081 ~ 452014 (+) False cmtm4
TU424557 lncRNA upstream 49263 338823 ~ 436472 (+) True G358331
TU424576 lncRNA upstream 61092 379230 ~ 424643 (+) True G358344
XR_004577209.1 lncRNA downstream 58254 545576 ~ 548885 (+) True LOC117596049
TU424735 lncRNA downstream 145166 632488 ~ 632693 (+) True G358478
TU424767 lncRNA downstream 389934 877256 ~ 914967 (+) True G358508
TU424772 lncRNA downstream 421174 908496 ~ 919746 (+) True G358513
TU424774 lncRNA downstream 428891 916213 ~ 946514 (+) False G358513
XM_026937706.2 mRNA upstream 8763 466540 ~ 476972 (+) True tk2
XM_026937707.2 mRNA upstream 8763 466649 ~ 476972 (+) False tk2
XM_034299619.1 mRNA upstream 37146 426873 ~ 448589 (+) False cmtm4
XM_034299617.1 mRNA upstream 64867 405979 ~ 420868 (+) True dync1li2
XM_034299618.1 mRNA upstream 64999 405979 ~ 420736 (+) False dync1li2
XM_026937569.2 mRNA downstream 465883 953205 ~ 995231 (+) True cdh11
XM_026937736.2 mRNA downstream 816559 1303881 ~ 1433318 (+) True cdh8
XM_026937737.2 mRNA downstream 816559 1303881 ~ 1433318 (+) False cdh8
XM_034299423.1 mRNA downstream 902510 1389832 ~ 1433318 (+) False cdh8
XM_034299457.1 mRNA downstream 1533398 2020720 ~ 2174969 (+) True itfg1
TU424567 other upstream 46849 426896 ~ 438886 (+) False cmtm4
TU424577 other upstream 133966 348769 ~ 351769 (+) False ccne1
TU424578 other upstream 133966 348769 ~ 351769 (+) False ccne1
TU424579 other upstream 133966 348769 ~ 351769 (+) False ccne1
TU424532 other upstream 137059 344118 ~ 348676 (+) False ccne1
XR_004577234.1 other downstream 1403252 1890574 ~ 1904591 (+) True LOC117596061
TU425115 other downstream 1833849 2321171 ~ 2338758 (+) False c25h16orf87
TU425321 other downstream 2148967 2636289 ~ 2664941 (+) False igdcc4
TU426380 other downstream 3235704 3723026 ~ 3729877 (+) False cylda
TU426382 other downstream 3254464 3741786 ~ 3745457 (+) False cylda

Expression Profile