RNA id: TU424767


Basic Information

Item Value
RNA id TU424767
length 1225
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G358508
representative True

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 877256 ~ 914967 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgatttttttttttttttttttaccgaaGCACACAGTGAAGTTTTTTAATGTCTAAAACCATCTTTTGTGTGAAATTCTGACATGTAGAGAGACTCAGATAAACTCAAAGCTCTTTATCTCTTCTAAAAGTGAAGTGCTAGTTATTATTTTCCGGAGACTTTACAATCGGAATAATCGAGTGGAAATCGAGCGAACTTGTTCTTTGGACGAATAAAGAGGTACGAGACCTTGAGAAGCACAACATCCAACTGAgggaagattttattttttttttgcaaacagcCCTAACAAAGCTTCTGTTCTTACTTTTTGAAAGAAAGCACACTTCCTTTAATCATGTTGGTGGAGTTTCACAGACTGCAGCCACACGGTGGTTCGTCTTATTCTTACGAGCCGCCTCGTGTATAAAACTCTGATGTTTTGGGGCTGATAAAGAGACGAGAAAACCGTCTGCAGCTCAGGATCCACCTGGTGGGAGACAGACGATGGAAACTAACTAGGGCTCTTGTATTTCTTTCTCAAAGCGAACAATGCATCCTGGAGCAATAGCGTTAAGTGCACGAGGTTTGCTAATTATCAGCTGGTGTTCGGTAACAAACACGGAGCGCAGGAAAAAGGTTCAGCTTCAGACGAATcgctttttttattcttctttcacCTGCGTGTACGCTCTTCTTTCTGGAGCCTAATTACGACTTGGAGGCAGCTGAAAGAGTGaaggaggttaaaaaaaaaaaagtagcatcATCATGAATCAAAATCCGGCTTGTTTTAATTTCCAGTGACACGTGTTCCCGTGTTATACCAGAACGTTCCGAGGGACGGAGTTAATCACGATATTTTACTCTTCAAATATTTGCATGTTGCTTCAGCAACCTGTGAAATTACacaaatgagagagaaaaaaaaggaggaagatgaagaaggaTGATCGCACCGCCAGATGCTCGCTATTTATCTGCTCAGTGACGTGTCGGTGATTGCCTGGACTCTCATCATAATCAAGCGACTGCACGGCGTAGCGCGCTACTAATGAGAATTCACCACAACGGGGAAAATAATCATGAAGCGGAATTACTGCCgtcaccctgaagctgattattttcctataacagcacgttcccaagtgttttattcctctgacacCACAGCAGATTTCtgtgtttatagttaaatttaatgtcagtgaaacaagttccttttctcagctataaacagtcgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424735 lncRNA upstream 244563 632488 ~ 632693 (+) True G358478
XR_004577209.1 lncRNA upstream 328371 545576 ~ 548885 (+) True LOC117596049
TU424593 lncRNA upstream 389934 485735 ~ 487322 (+) True G358359
TU424569 lncRNA upstream 425242 448081 ~ 452014 (+) False cmtm4
TU424774 lncRNA downstream 1246 916213 ~ 946514 (+) False G358513
TU424776 lncRNA downstream 11796 926763 ~ 928691 (+) True G358515
TU424780 lncRNA downstream 24269 939236 ~ 944022 (+) True G358518
TU424781 lncRNA downstream 56613 971580 ~ 972346 (+) True G358519
TU424851 lncRNA downstream 225040 1140007 ~ 1140358 (+) True G358577
XM_026937706.2 mRNA upstream 400284 466540 ~ 476972 (+) True tk2
XM_026937707.2 mRNA upstream 400284 466649 ~ 476972 (+) False tk2
XM_034299619.1 mRNA upstream 428667 426873 ~ 448589 (+) False cmtm4
XM_034299617.1 mRNA upstream 456388 405979 ~ 420868 (+) True dync1li2
XM_026937569.2 mRNA downstream 38238 953205 ~ 995231 (+) True cdh11
XM_026937736.2 mRNA downstream 388914 1303881 ~ 1433318 (+) True cdh8
XM_026937737.2 mRNA downstream 388914 1303881 ~ 1433318 (+) False cdh8
XM_034299423.1 mRNA downstream 474865 1389832 ~ 1433318 (+) False cdh8
XM_034299457.1 mRNA downstream 1105753 2020720 ~ 2174969 (+) True itfg1
TU424567 other upstream 438370 426896 ~ 438886 (+) False cmtm4
TU424577 other upstream 525487 348769 ~ 351769 (+) False ccne1
TU424578 other upstream 525487 348769 ~ 351769 (+) False ccne1
TU424579 other upstream 525487 348769 ~ 351769 (+) False ccne1
TU424532 other upstream 528580 344118 ~ 348676 (+) False ccne1
XR_004577234.1 other downstream 975607 1890574 ~ 1904591 (+) True LOC117596061
TU425115 other downstream 1406204 2321171 ~ 2338758 (+) False c25h16orf87
TU425321 other downstream 1721322 2636289 ~ 2664941 (+) False igdcc4
TU426380 other downstream 2808059 3723026 ~ 3729877 (+) False cylda
TU426382 other downstream 2826819 3741786 ~ 3745457 (+) False cylda

Expression Profile