RNA id: TU424780


Basic Information

Item Value
RNA id TU424780
length 4764
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G358518
representative True

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 939236 ~ 944022 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGAACCATTTCTTCTCAGAGTGGATCTGAGGTCTAGAAGgctaattaaaggaaaaaatggggaacaaatccaccctgaatgacccGTAAATCAATATATATGATTAATGTGTGATATTTAATTGCGTCTGAGACAAATTAGAGCCAGAAATATtccaatataaacatatttaatgtgtttcagagtggaCTTTAACTTTAATTAAGGAATACATCAttacaaccagaaaaaaaagtaataataaccACATCCGACTTTAGAAAGAgtcagaaaatgaataaaaaatgaccTTCACCctgcatgtattttttatttttgttcataaaaAAGTTCACTGATGAGGTGTGGTGATAAAGAGACCGCACCAGTGACcatttctgttaaaaaataataaaaaaaggtctaaataattaaaaaaaggtttaaaataaaatttttaagtcTGCCTGCgatgagagagatgaaaacAGGAAGCGGAGGAAGCTGTTTGTTCACATCAGCCAGCCCACCCTCTGAGCGTTGACCTTTGACCCTAAGCTTAAAGTAGAATAAATCACAACAGGGAGCCGGCATTTATGGAGGTTTGTTCCTCTTCATGTGCAGATGAGTGTTGTTACGAGGCGTTTAACCTGGAGCTCTGTGGTGTTagcacaacacacacacacacacacacacacacatgcacacacacacacacacatgcacaaacgcATGCAAAATGCTTTCACGTGGAGATCATGGGTTTATTTTGAGCTACGCAGCTAAAAAGCCAGATTTATTGTCTGGTTGCCATGGAGATTGACTTATTTATTAAGACTGCTTGTTGTTTCCAGTGTTAGCATAAGACATGCTAGTCACATTCAGGACCCCGGACTAAACTTTCAGCCCCCAGCGTTTTGATAGAGATTACGGGTTAGAGGAAGCTGATGGTAGATTTATGGTCTGGTTGCCATGGCGAGTGACATATTTTCACCTTACGAAGTTAGTGTTTTGAGGCTATAAATAGCTCCGCAGACTCTAAATCTAAATCAGGGTCACTAAGGCCACCTCCTCATGTCTAGAAGGATTTTCTCGGACTTTGGATATGGCGTTAATGTATTTCAGATCCTCTGGTGCTTATTGATCGCAAAGCCGGAGTTTTGATTAAACAGAGATGACGAATCGATAGCGTTTCAGCTCGGAGCTCAGAGCGACGCCTTGCTATTTGCGCCACTTTTGATCAGAATGGTGATTAGCTCCTGAAACACCACAGTTTTATTTTCCCTGCATTAAAATTCAACTGCAGCCGAGTGACTCTGAAGAAGATTGTCCAGATGCAAAGCCCTTCTgctgaataaaaatgtcatgtataaacgaagacagaaagaaagaaagaaagaaagtgaaactCGGTTTCCGCAGGATTACCATGGTTCATAAATCCCAAAAGGAATCTGAGAAGGAGACACTGAAAACAAATGTAATCCCCTGCAGGGCTTTACCAATCTCATTTCTCCACTTtgtgagaatgagaaagaggaTTGCCCTGGTTCTCGCTTCTCTTTGTCAAATTTCCGTCAAATTAATATCTTCTTAATTTCTGCTTTTGCTGCAGGAAGAATAGCAGGAGCGCCGGTCGGCTCGGGTCAAAGCCGGCCTCGGAGCCTGTGCAGCTTTTTCATCCTTTCCAGCTGCTCGTGAAAAGGCGGAGTGTGTTAACGCAGGGTGAAAATCCCCATCAGGCACATGTAGAGTGTGTGAAAGCTGGGAGGTCGACTACTGCACCGAGAAAGGTCATTACGTAACAAAAAATAGACAGCAGTGGCATAAATAGCGCTGTGTTGGGAGATTAGCTCGAGAAAATGGCTAGCTAAGGGACAGAGCTGATGATAAGGTCCTGTACGTCCTCAATGTCAGAGACTTAAAAAGGTCAAAGCTGTCATGATGAACAGGACTGTGAGACATGCGTTAGCGTGAGGTATGCTTTCAGATACGTCACGTGTCACAGCGTGAAGCTGGTTCCTCAGGGGCTTAAACAACTACAGCCAGGTCTCAAATTACGCCATATGCGCTATACGctgtatattatacacaaaCCCCTACAGGAAGAAccacttttataaataaaaaatgtccaaTCTAacctttttaaagcttttgtaTCCACACTATACCAGCATCTCACTGAGGCAtctggaagctccgccccttctgCTACATAGCTACATGACCGCGTAGCACAAAGAAGTGTGACATTCTACACTTTTCAATCATTTTATACATAAGCAGGGTTTTAAGTGCATTAAAAGTAAGCATTCCTAGTAACGTTCTTACTCAACCTTTCCACCACATGGTGACTCCACCCCTTTTGCAATGTAGCTACGTAACCTCTTGGTACTGTGTGTCGATTTTGACAAATTTGACAATTTTAGACGATTTTTGTACATCATCAGGGTGTTCAGTGCACTAAAATTACGCAAAGTGTGTCATTTGAGACGCAGCTTTTGCtaattaattattgaattattcTGAATTAGCAAGAGCTGCGCGCTTTTAGTATAGTTATCGAATGTACGTTACTGTAAATACGTCAACCAATCATGAACAAGCATTTTACTTGGTAATGGTTTAATTATTATCAGTCCTCCTTCATTCTATTTTTGTTTAGGTGTCTAAAGTTATTATTTTGagctaattattttttatttgtgctaaATATCAACACATACCTTAATAACACATTATGCAATGCTGCATGTATACAAATAATTCTGAAGGATTTACCTGAAAaagggcggagcttaagttaCATTCGATTATATACTAGATCATGTGACATCTTCACTTTTACAGCTtgatgttaaatattagatttaaTGATGGAAGTTAAACAGAACACTCGCTAGCTTTGTTAACATTGCTGCATTATCGCACTGTGTATTTTTACactaagctccgccccctgtaGACTCACTTGGCAATCgtttctgttattttctccaTCGTGTGGCCGGATCGCTGTGCGTCTTGTTTGCGgctcatttttttaaacgttGCTAATTAAAGTGCTtcgtttgcttttttttcacgTCTCGATTCTCGACCGCGGAGAgaaatttcattttgaattttagtCCTGGTTCCATTAATTCCAGCATCATCTGCTCTAACGGGTCAGAGTTTTCTCCATTAAGTCGCTCGGTATTAATCCAGACAATCATGTCATGTATGTGCGCAGGCGATGGGTAATTTCCTCCACAGTGACTCCCACAGGCGAAGAGCCGCTCCTAATTGACTCGGCAATGTGACTGATTAACTGGCTGCTGTGGAACCCGTGATATATTGGGATATATTTCACAAACAGGCATGTTGCTCCCAGACGGGAGGGTTATTCTTAATTAATGACACGGAAGCGACCGGAGGAGATTGATAACGTACACTATATTACTTCCTCTCCTCCATCTTGCCGTTATTTACTCCCTGTTGGCGTCACGGCGTTGTCGTTTTCAGCCTGCGTTTTGAGCCGTTTACACCTAATCAGCAGTTCTCGGTTGTTTCTGAGCGTCCCTGCTGGTAGATGGCTGTCACTGGATGTTTTAAGGGAGACGGAGTAAGTGTTGgagtcagcagtgtgtgttcgGCGAGCTGGATTCAGAGGCCGGGAGATGATTGGAGATGAAGCATTTCCTGTTTTAGTCGTCTCAGAGGAGCTCTAAGCTCTGAGCTTGAACTTCAAATTGTCTCCTCTGATGCTCTTTGAAATGCTTCAGAAGCTGCTTAGCGTAGCAGTTTTCCTttcatttaagtttttttatttctattctgGACTCTGGAGGCCTCAAAGTTCCACAGGTCTTTGCTGGGGTGTTTTTTCTGCCTGATATTGCACGACAAACATTTAGGTTAGGTTCCTCTGCTGTAGCTGTGATTTAGAACAGCTGCTTAGAACCATGTGGGAGACCTCACAGGGCCGAGAGAGCCATAAAGAACTCGTAAACAGTTCAGCTCAGGGTTAAAGTCGGATCCTGGTCACGGTGGTAGTCCTGATAGTTCATACCAGGTGTTGATCTTCATTAGGACAGTTAGTAAACTGGTTTTAccatcattttgtttaaattcaaGGAATGGTGTTAGCCGTGTAGAAATTAGAGCTAGTGTTTGTAGTGTAGACATTAGAGTTATCAGTCTGTTAATTAAAATTTAGAGGTCGTTCTTTTATAAATTAGAGTCAGACTTTAACACTAGCAGTACAGAAATTCAAGTTAGTAGCATAGAAATAACAATACTGAAATTATAGTTAGAGCACTGTAGAAATTTTAGTTAGTGTTAGAGATACAAACTATTTCGTTTAGAAATTAGAGTTAGCAGTAGAGAATAAAATTAGTGTAGAAATTAACGTTCGAGTTAGTAGTGTAGAATTAGAGTTTGCGTTATCAGTGTAGAATTAAAGTGTAGAGATTGATATGGAAATTGAAGTTCTCTTAGAGTTTAGACATTAGAACCAGTACTTTTATAGAAATTAGAATTAGATCTAGCAGGATAGAAATTAGTTAGTTTTTGTATAGAAATGAAAAGTGAAGCAGTGAAGAAGCAGCGTAGAATTGTGTAGAATTAGAGTTTGAGTTATCAGTGTAGAGACTGATAGAGACATTAAAGTTCTTTTAGAGTTTAGAAATTAAAACTAGTATTTGTACAGAAATTAAATTTGATCTAGCAGGATAGAAATTAGTTAGTTTTTGTatagaaataaaagtgtgattTAGCAGTGTAGAATTAGAGTTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424776 lncRNA upstream 10545 926763 ~ 928691 (+) True G358515
TU424772 lncRNA upstream 19490 908496 ~ 919746 (+) True G358513
TU424767 lncRNA upstream 24269 877256 ~ 914967 (+) True G358508
TU424735 lncRNA upstream 306543 632488 ~ 632693 (+) True G358478
XR_004577209.1 lncRNA upstream 390351 545576 ~ 548885 (+) True LOC117596049
TU424781 lncRNA downstream 27558 971580 ~ 972346 (+) True G358519
TU424851 lncRNA downstream 195985 1140007 ~ 1140358 (+) True G358577
TU424861 lncRNA downstream 295892 1239914 ~ 1240138 (+) True G358587
TU424994 lncRNA downstream 506133 1450155 ~ 1450465 (+) True G358713
TU425001 lncRNA downstream 663617 1607639 ~ 1607911 (+) True G358720
XM_026937706.2 mRNA upstream 462264 466540 ~ 476972 (+) True tk2
XM_026937707.2 mRNA upstream 462264 466649 ~ 476972 (+) False tk2
XM_034299619.1 mRNA upstream 490647 426873 ~ 448589 (+) False cmtm4
XM_034299617.1 mRNA upstream 518368 405979 ~ 420868 (+) True dync1li2
XM_026937569.2 mRNA downstream 9183 953205 ~ 995231 (+) True cdh11
XM_026937736.2 mRNA downstream 359859 1303881 ~ 1433318 (+) True cdh8
XM_026937737.2 mRNA downstream 359859 1303881 ~ 1433318 (+) False cdh8
XM_034299423.1 mRNA downstream 445810 1389832 ~ 1433318 (+) False cdh8
XM_034299457.1 mRNA downstream 1076698 2020720 ~ 2174969 (+) True itfg1
TU424567 other upstream 500350 426896 ~ 438886 (+) False cmtm4
TU424577 other upstream 587467 348769 ~ 351769 (+) False ccne1
TU424578 other upstream 587467 348769 ~ 351769 (+) False ccne1
TU424579 other upstream 587467 348769 ~ 351769 (+) False ccne1
TU424532 other upstream 590560 344118 ~ 348676 (+) False ccne1
XR_004577234.1 other downstream 946552 1890574 ~ 1904591 (+) True LOC117596061
TU425115 other downstream 1377149 2321171 ~ 2338758 (+) False c25h16orf87
TU425321 other downstream 1692267 2636289 ~ 2664941 (+) False igdcc4
TU426380 other downstream 2779004 3723026 ~ 3729877 (+) False cylda
TU426382 other downstream 2797764 3741786 ~ 3745457 (+) False cylda

Expression Profile