RNA id: XM_026911574.2


Basic Information

Item Value
RNA id XM_026911574.2
length 2130
RNA type mRNA
GC content 0.44
exon number 2
gene id plekhf1
representative True

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 320536 ~ 323330 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATTCTGAGAAGACAGAGAAATCCCAGCTGAGCAGGAAAGACGAGTTTACCGCACATATATAGAGCACCGAGGCAACTTCCtcttcacacactcttcacacactcttcacacacatacGTGCACAATCTATCGGATCTATCCAGAGGaaactttaaacacacagactgatCACTCTCTGAGAAAACTCTTCAACAATCAGACAGCAGTGATGGTGGACAACCTGCAGTTCGGGATGGAGAACCGTGAGCGTATCCTGGCCGTGGAGAACTCCTTCATTCCGGGCGGGAAGCCTCTCCTCGCTCCGGGTCGCGTCCTGATCGGAGAAGGTCGTCTGCTGAAGCTGTGCAGACGCAAACCGCAGCCCAAAGTCTTCTTCCTGTTTAACGACATCCTGGTGTACGGCAGCATCGTGGTCCCGGGCCGCTGGAACAACCACCAGCAGATCCTGCATCTGGAGGAACTGGAGCAGGAGAACCTGAAGGACGGAGTGGGAATGAGTAACCAGTGGCTCCTCCGGACGCCACGCAAGTCCTTCCACATCTCCGCGGCGTCGCTGGAGGAGAAGCAGGCGTGGATGGAGCACATCGAGTGCTGCCGGATGGAGCGGCTGAAGCAGCTCGGGTTGCCCGCCGTGATGAAGCCACTCGCCGCCATCTGGATCCCCGACGCCGCCTCGGCCGTGTGCATGCGCTGCTCAGAGCCCTTTAACGTCACCCAGCGCAGACACCACTGCAGACACTGCGGCTTCGTGGTGTGTAACTCCTGCTCGAAGACTCGCGCCAtcctcacacacatctcacccAAACCGGTCCGGGTGTGTCGCCGGTGTAAGGTCTCTCTGTGCGAGAAGAAAGTCAGCAATGAAGCTTTGAGGTGGAGAGACACGATCGAGGAGATGCCTGAATACGAAGAATCCAGTGATGAGGACCAGGAggagaaccacacacacacacacaccgcatgGTTCAACGCTTACCGAGAAGCCGAGCCTCTGTACTGCTACTTTAACCCCAAACACTCCAAACCTCCACAGCTGTAGTGTGAACTTCTGCAGAACATCTAAAGAACCTTCAAACAGGGTTAAAAAGACAATGTGAACAGTTGTGGTTCTCCACTAAATacgagaacacacacatacacacacacacaccatcatcataatcatgatTATCAATTCTTCCTAACACTATTTCCATCACACTTCATCTTCATCCACAGCACTGACGATGTTCTGCTGATGAACTTGTCTAATGAAAGGATCAGCATGATGTATGATTCTACACTGACGTGAACAACACTGAGAGCGTACGACTACACAAAATCAACatcaaacatttaaattatttatttaagattacTGTAATATCAGTTTCTGTGACAGTGAACAGTTTTATTGTGTAAGAATTCTGACTGCTGCTGAGTTTTTTCAATCTTGCTGTTATAAACAATGATGTTTTtataattactaataataataatgataataataataataatttttgtgaAATTAATAACTTTATCACATTCTGTAccctcaggaaaaaaaaggtatttcattagcattagcattataaTGTAGTGCTGTTATTTAAGGCTACATAGTAGAGCGCAGTCTTATGCTCTCTGACGTCACTACTGCTGTAACGAGTCGCCCTCTAGTGGACATGTGAGGTGTGacactgtatataaatgtcTGTATGTGGATTATATGTTTGTATTTCAAAATTTAATATTAACTTTATAATTCAAGcactaataaatattattataaaagcatgcagtggtattattattattattattattattattattattattattaatgttagaGGAGTAGCTCTAAAGGGCATTGATGTGCAAAATAAAGCAGCTttatgtaacacacactgaaagcaAAGTTCACAGTTTTCCCCCAGTGGTTTATTACATtctttatgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagacagagagccACTTCAGCTCTAGTACAGAACAGAAACAgggagaaagaatgaaagaataaaaatctgACATGTGACTCTCTGACCTCagcatttacaataaaacaaaacagtgagaTCTGAAATAACAGCCAATTTattaactttataaaaaaaa

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424536 lncRNA upstream 34009 284243 ~ 286527 (+) True G358312
TU424539 lncRNA upstream 45913 273454 ~ 274623 (+) True LOC113525132
XR_003402628.2 lncRNA upstream 46021 273464 ~ 274515 (+) False LOC113525132
TU424527 lncRNA upstream 140386 179938 ~ 180150 (+) True G358305
TU424526 lncRNA upstream 141222 179026 ~ 179314 (+) True G358304
TU424557 lncRNA downstream 15493 338823 ~ 436472 (+) True G358331
TU424576 lncRNA downstream 55900 379230 ~ 424643 (+) True G358344
TU424568 lncRNA downstream 68003 391333 ~ 394621 (+) True G358338
XR_004577246.1 lncRNA downstream 76017 399347 ~ 400856 (+) True LOC117596071
TU424569 lncRNA downstream 124751 448081 ~ 452014 (+) False cmtm4
XM_026911593.2 mRNA upstream 13773 299673 ~ 306763 (+) True LOC113525130
XM_026911576.2 mRNA downstream 7657 330987 ~ 338641 (+) True si:ch211-260e23.9
XM_034299453.1 mRNA downstream 20732 344062 ~ 351768 (+) True ccne1
XM_034299454.1 mRNA downstream 39555 362885 ~ 376246 (+) True nae1
XM_034299617.1 mRNA downstream 82649 405979 ~ 420868 (+) True dync1li2
XM_034299618.1 mRNA downstream 82649 405979 ~ 420736 (+) False dync1li2
TU424532 other downstream 20788 344118 ~ 348676 (+) False ccne1
TU424577 other downstream 25439 348769 ~ 351769 (+) False ccne1
TU424578 other downstream 25439 348769 ~ 351769 (+) False ccne1
TU424579 other downstream 25439 348769 ~ 351769 (+) False ccne1
TU424567 other downstream 103566 426896 ~ 438886 (+) False cmtm4

Expression Profile