RNA id: XM_026937569.2


Basic Information

Item Value
RNA id XM_026937569.2
length 3802
RNA type mRNA
GC content 0.50
exon number 12
gene id cdh11
representative True

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 953205 ~ 995231 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGATCGGATCCGCTGGAGTTTGGGAACAAACTGAGACTCGGCGCCTGGGATGAACCTCAGCGTGGGCGGACATATTAAGTGAACCACCGCTTCGTCTACATCAAATCCACCCTATTTCCTCCCCAGAACCAAAACATCCAAGCTTCAggacgtaaaaaaaaaatactctgagCAGGACGTCGGCGAGAACGGACAGGATGTGGGACGGTTTGAGAGTTCAGGTGTTCTTCTTGTGTTTAATAGCGATGTTATGGATTACAGCGGCGTCTCGAGCCCCTCAGGAACACGGACATCGCCGCCATCTTGCTTCCTACAGACAccgagagagaagaaaggatgGACACGTGCTCCATCGCTCCAAGCGAGGATGGGTTTGGAATCAGTTCTTCGTCATTGAGGAGTACACGGGACCTGATCCTGTCCTCGTGGGCCGGCTTCACTCTGATGTGGACACAGGGGACGGCAACATCAAATACATCCTCTCAGGTGAAGGCGCCGGAACCATCTTCGTCATCGATGATAAAACAGGTAACATCCATGCAACGAAGACGCTGGACCGTGAAGAACAAGCGGAGTACACGCTCACCGCACAGGCCGTGGCCCGAGACACCAACAAACCTCTGGAGCCTCCGTCCGAATTCATCGTCAAGGTCCAGGACATCAACGACAACCCGCCTGAGTTCCTGCATGGACCATACTACGCTCGCGTGGCTGAGATGTCCAACGTCGGTACGTCAGTGATTCAGGTCACGGCTACAGACGCCGACGATCCGACGTACGGAAACAGCGCTCGGCTCGTCTACAGCATCCTGCAGGGACAGCCGTACTTCTCTGTGGAACCTCACACAGGGATTATCCGCACTGCGCTGCCCAACATGGACCGAGAGGCTAAGCAGGAGTACGATGTGGTCATCCAGGCGAAGGACATGGGGGGCCACATGGGCGGCCTCTCGGGGACGACGCAGGTGAAAATCACGCTAACGGACGTCAACGACAATCCGCCCAAATTCGCACAAGgtgtgTATTCGATGTCCGTGTTGGAGGATAAAGTGCCGGGAGAGGAGGTGGGCCGTCTGAAGGCCAGAGATCTGGACCTGGGAGAGAACGGACTGGTGGAGTACACGCTGCTGGATGGAGATGGAATGAACACCTTCGAGATCAGCAAAGACTCCGAGACTCAGGAGGCCGTCATCAAACTgaagaagCACGTGGACTTTGAGACGAAGCGGTCGTACACGCTGAAGGTGGAGGCGGCGAACCCGCACGTGGACCCTCGCTTCATCAGCTGGGGGCCGTATAAAGACACGACGGTGGTGAAAATCTCTGTGGAGGACGCTGACGAGCCGCCGACCTTCATGGCTCCCAGTTACAGCTTCGAGGTGGAGGAGAACGCGCCAGGGGGAACCGTGGTGGGACGCGTACACGCCAAGGACACGGATATCGCCAACAATCCCGTCAgATATTTAATCCCTCGCTACACAGATCTGGAGGAGTTTTTCTCCATTAACCCCGAGGACGGCATCATCAAAACCACGAGGCCTCTGGACCGGGAGACTCAGGCTTGGCACAACATCTCCGTGAGCGCTACAGAGATCGGTGGACATCACCAGGACGCTAAAGTGCGAGTGAACATCAAAGTAAAGGACGTGAACGACAACGCTCCGGAGTTCGCCACTCAGGATGAAGTGCTCATGTGTGAAAACGTGACTCCGGGAACGGCCATAAAGACGGTGAGCGCGGTGGATAAAGACGAGATGGCGCACCGGCAGCACTTCCACTTCAGCCTCTCTCCCAAAGTGGCCAATAACCACAACTTCTCTCTGAAGGACAACAGAGACAGTACAGCTACGGTGGTGGTGATCCGGAAAagtttcagcaggatgatgcagAACGTTTACGCTCTGCCCATCGAGATCAGCGATAACGGCGTGCCTCCTCTCAGCAGCACCAACACCCTCCTGATCCAAGTGTGCAGCTGCGACGCCAAACAGACCATCCTGTCCTGTAACGTGGAACCGTTGTTCCTGCCGGCGGGCCTCAGCACCGGAGCGCTCATCGCCATCCTCGCCTGCATCGTCATCCTGCTCGCGATCGTGGTGCTCTTCGTGGCTCTGCGCCGTCAGAAGAAGGAGCCCTTGATCGTGTTTGAAGAGGAGGACATCCGTGAGAACATCATCACGTACGACGACGAGGGCGGCGGTGAGGAGGACACGGAGGCGTTCGACATCGCCACGCTGCAGAACCCCGACGGCATCAACAGCTTCCTGCCTCGCAAAGACATCAAACCCGAGCTGAGCTACAGCGTCCGCGCCGGACTCAGACCCGCCGGCAACGGCGTCGACGTGGACGAGTTCATCAAGACGCGAGTGTGCGACGCCGACAACGACCCCACGGCGCCTCCGTACGACTCCATCCAGGTGTACGGCTATGAGGGGCGGGGCTCCATCGCCGGCTCTCTGAGCTCGCTGGAATCGGTGACCACAGATTCGGACCTGGACTACGACTACCTCCAGAACTGGGGGCCGCGTTTCAAAAAACTGGCCGATCTTTACGGCACCAAAGACTCGGCAACCGAAGACAACTCTTAACGACGGATCACGTTCGTcttcgcaaaaaaaaaacccgccCACCCAAAACAGCTCCCCTCCCCCCCTTTGCCATCACTTCCACTAACGACGTGTGCTGTGTGACGTTTACTATAAGCAATTCCACGACTTTCATCTATTTAGGTCGTTTTTTTGTTCCTGTATACGTCGAGTATACTACTAGGAATCTTTTACGTAGGCGTGATCAGAACAGATGGAGcagacaaaaaaatgagaaaaaaattaataaaaggaattaaaatgtgtaaaaaaaaaaaaaataaacaaacacctcTGACACGGGACGTACGGAAAGTCAAAGCAGCGCGTGTGTGGGACGCGACGTATTCGACATTGATTGCTGATACTGTGAACGAGCTCacgccagagagagagagagagagagagagagagagagagagagagagagaaacagttgCCTTATTAACACAACATACAGAAATACGTCAGCGATTTGAGACGTGTCCCTCATCAACAGCGCCTCCATCAGGACATCGGAGGAACGACCCAAAactggtcttttttttaattttgtattatttttgctttcatCTGTATTATCTTacacagaaatgagaaaatccatgaataataataataaaaaaaaagtccccgATGAACAATCACACAGAAAGACACGTGAGCTCGGAAACCGCCTTAAATCACGGACACTCTCGCAGCGCagtgcatttcttttttaaaaaacgaaAACTATATCCTAAAACAAACTAAAACCCATATAACCTGTGTACAGTACCAATGTGCAGATATGTCTCTTGAGGATCAAACTCACGCCTACCGGTTTCATGTACGtctttttattatgattattatgattattattttattatgatattattattattatgactatCATTATTTCCagtgtcttcattttttttattttctttaatattttttggcGTATTTTATTCTCCCTTGTGAGAAAAATAGCAATCTGTCCTGTCGCGGTGAAAGAACGGCTAATTTCTATGTCGATTTTATGGTAACTATTTGTACAATTTTAAAAGTTCTTATTTTAGTATACATACGAATATCAGTATTTCGACATGTAAGAAACTGTTACAGCATCACActtatattttatgaacattGTACTGTTGCTTTATTATGTGCTTCAATCTACGAAGCGGAAAAACTTTGAAATAAATGctctttttataaaataaacaaa

Function

GO:

id name namespace
GO:0048840 otolith development biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K06803 CDH11; cadherin 11, type 2, OB-cadherin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424774 lncRNA upstream 6691 916213 ~ 946514 (+) False G358513
TU424780 lncRNA upstream 9183 939236 ~ 944022 (+) True G358518
TU424776 lncRNA upstream 24514 926763 ~ 928691 (+) True G358515
TU424772 lncRNA upstream 33459 908496 ~ 919746 (+) True G358513
TU424767 lncRNA upstream 38238 877256 ~ 914967 (+) True G358508
TU424851 lncRNA downstream 144776 1140007 ~ 1140358 (+) True G358577
TU424861 lncRNA downstream 244683 1239914 ~ 1240138 (+) True G358587
TU424994 lncRNA downstream 454924 1450155 ~ 1450465 (+) True G358713
TU425001 lncRNA downstream 612408 1607639 ~ 1607911 (+) True G358720
TU425010 lncRNA downstream 720315 1715546 ~ 1715887 (+) True G358726
XM_026937706.2 mRNA upstream 476233 466540 ~ 476972 (+) True tk2
XM_026937707.2 mRNA upstream 476233 466649 ~ 476972 (+) False tk2
XM_034299619.1 mRNA upstream 504616 426873 ~ 448589 (+) False cmtm4
XM_034299617.1 mRNA upstream 532337 405979 ~ 420868 (+) True dync1li2
XM_034299618.1 mRNA upstream 532469 405979 ~ 420736 (+) False dync1li2
XM_026937736.2 mRNA downstream 308650 1303881 ~ 1433318 (+) True cdh8
XM_026937737.2 mRNA downstream 308650 1303881 ~ 1433318 (+) False cdh8
XM_034299423.1 mRNA downstream 394601 1389832 ~ 1433318 (+) False cdh8
XM_034299457.1 mRNA downstream 1025489 2020720 ~ 2174969 (+) True itfg1
XM_026937401.2 mRNA downstream 1182747 2177978 ~ 2203598 (+) True LOC113540805
TU424567 other upstream 514319 426896 ~ 438886 (+) False cmtm4
TU424577 other upstream 601436 348769 ~ 351769 (+) False ccne1
TU424578 other upstream 601436 348769 ~ 351769 (+) False ccne1
TU424579 other upstream 601436 348769 ~ 351769 (+) False ccne1
TU424532 other upstream 604529 344118 ~ 348676 (+) False ccne1
XR_004577234.1 other downstream 895343 1890574 ~ 1904591 (+) True LOC117596061
TU425115 other downstream 1325940 2321171 ~ 2338758 (+) False c25h16orf87
TU425321 other downstream 1641058 2636289 ~ 2664941 (+) False igdcc4
TU426380 other downstream 2727795 3723026 ~ 3729877 (+) False cylda
TU426382 other downstream 2746555 3741786 ~ 3745457 (+) False cylda

Expression Profile