RNA id: XM_026937706.2


Basic Information

Item Value
RNA id XM_026937706.2
length 1646
RNA type mRNA
GC content 0.42
exon number 10
gene id tk2
representative True

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 466540 ~ 476972 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACGCGTCGCACAACCCGGAAGTGTCGGGTTACGTGAATTCCCTTTAACCGCTgccatgcagtgtgtgtgtgctgtaacgCAGAGAGATGATGAACAGGTTCGGAGCcactttttgtcctttttggtTCAAATCTACATCCGTGAATGTGTTTAAAACTTTATTCCGAAATCCTGCTGCGAGAAATCAGAGTCTGAGCCGCGGGTTTCACATCAACAGCCAGCTCAGGACAGGAAAACTGGTCCGTAATGGTGAGGACAGGAAACCAGTGatttGCATCGAGGGAAACATCGCGAGTGGAAAGACGACGTGTCTGGAGTATTTCAGCAAAACCAGCAACATCGAGGTTCTGACGGAGCCGGTTTCCAAATGGAGAAACGTTCGAGGACACAATCCCCTGGCGCTGATGTACGAAGACCCGGCGAGGTGGGGTCTCACACTGCAGACCTACGTTCAGCTCACTGTCCTCGACCATCACCTGTCCCAAATCGCAGCGCCGGTCAGGATGATGGAGAGATCGATATACAGCGCAAAGTACATATTTGTGGAAAATCTGTATAAAAGTGGGAAGATGCCCGAGGTGGATTACGCCGTCCTGAGCGAGTGGTTCGAGTGGATCATCAGTAACATCTCCATTCCTGTAGATCTGATTGTTTACCTGCAGACGTCGCCTCAGAAGTGTTTTGATCGTCTGAAGCAGAGAtgcagagaagaagaaaaagtcaTTCCACTGgagtaCCTGCAAGCTCTTCATCATCTGTATGAAGACTGGCTGATAAATCACACCTCATTTAAAGTTCCTGCTCCTGTTCTGgtgatcCCAGCTGATCATGATCTTCAGAAGATGCTCCATCAGTAcgaggagaacagagagaagatCTTCACCGTGCCTCGAGCTTCATAAAGAGAAACGTTTTGTTCCAGAGGCAGTGTTCAATCCAGCCGAGTGTGTTTCCTGCCCTGTTTTAACttcattaagtgtgtgtgtgtgtgtgtgtattggggtAAGTGTTAAACAATACTTCATAAGggttaaataataatgtaaaaaataaataaatatcagtgaTAGTAATTAGGGATAATTATGAATCTTTGAACTGACAGTGAATCAATTTGATTCATGATTCAAAATCAATTTTTGTAAGTTAAGATGATTTGATTCAGTGAGTCGATTCAGTGAGtcattttttattgatttatatttttcccAGCTGCTAGTCtgtaacacgcacacacacacacacacacacacacacacacacacacacacacacacacacagtgtaatctCAGGCTCAGGTGTGTGTAGAGGACCATTTTCTAATGAagtttatttgttatttcttatatattattattatttattttcctcatttgcatattaattggTATATCATTCATATTTATCTTGCTGTTTAAATCACATTCCACAGATCAGACCTTCATCCTGTTTCGTAAAGTTAAAACACCGAACACAAGACCagtttttgtaaagtttatttttatttgtttgaagcGTACAAAACCCTGAAATGTTCTCATTAAGGAAGTGGCACGTGTGATTGGAGGACCAACGGAGACTCTCTGTACTTTTTACTGTCGTATTGTTTACACTGTAATTTTAATAAACCAGTGAGAAACAGA

Function

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K00857 tdk, TK; thymidine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424569 lncRNA upstream 14526 448081 ~ 452014 (+) False cmtm4
TU424570 lncRNA upstream 14526 448081 ~ 452014 (+) True cmtm4
TU424571 lncRNA upstream 14526 448081 ~ 452014 (+) False cmtm4
TU424557 lncRNA upstream 30068 338823 ~ 436472 (+) True G358331
TU424576 lncRNA upstream 41897 379230 ~ 424643 (+) True G358344
TU424593 lncRNA downstream 8763 485735 ~ 487322 (+) True G358359
XR_004577209.1 lncRNA downstream 68604 545576 ~ 548885 (+) True LOC117596049
TU424735 lncRNA downstream 155516 632488 ~ 632693 (+) True G358478
TU424767 lncRNA downstream 400284 877256 ~ 914967 (+) True G358508
TU424772 lncRNA downstream 431524 908496 ~ 919746 (+) True G358513
XM_034299619.1 mRNA upstream 17951 426873 ~ 448589 (+) False cmtm4
XM_034299617.1 mRNA upstream 45672 405979 ~ 420868 (+) True dync1li2
XM_034299618.1 mRNA upstream 45804 405979 ~ 420736 (+) False dync1li2
XM_034299454.1 mRNA upstream 90294 362885 ~ 376246 (+) True nae1
XM_034299453.1 mRNA upstream 114772 344062 ~ 351768 (+) True ccne1
XM_026937569.2 mRNA downstream 476233 953205 ~ 995231 (+) True cdh11
XM_026937736.2 mRNA downstream 826909 1303881 ~ 1433318 (+) True cdh8
XM_026937737.2 mRNA downstream 826909 1303881 ~ 1433318 (+) False cdh8
XM_034299423.1 mRNA downstream 912860 1389832 ~ 1433318 (+) False cdh8
XM_034299457.1 mRNA downstream 1543748 2020720 ~ 2174969 (+) True itfg1
TU424567 other upstream 27654 426896 ~ 438886 (+) False cmtm4
TU424577 other upstream 114771 348769 ~ 351769 (+) False ccne1
TU424578 other upstream 114771 348769 ~ 351769 (+) False ccne1
TU424579 other upstream 114771 348769 ~ 351769 (+) False ccne1
TU424532 other upstream 117864 344118 ~ 348676 (+) False ccne1
XR_004577234.1 other downstream 1413602 1890574 ~ 1904591 (+) True LOC117596061
TU425115 other downstream 1844199 2321171 ~ 2338758 (+) False c25h16orf87
TU425321 other downstream 2159317 2636289 ~ 2664941 (+) False igdcc4
TU426380 other downstream 3246054 3723026 ~ 3729877 (+) False cylda
TU426382 other downstream 3264814 3741786 ~ 3745457 (+) False cylda

Expression Profile