RNA id: XM_026937707.2


Basic Information

Item Value
RNA id XM_026937707.2
length 1590
RNA type mRNA
GC content 0.41
exon number 10
gene id tk2
representative False

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 466540 ~ 476972 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctttttgtcctttttggtTCAAATCTACATCCGTGAATGTGTTTAAAACTTTATTCCGAAATCCTGCTGCGAGAAATCAGAGTCTGAGCCGCGGGTTTCACATCAACAGCCAGCTCAGGACAGATCTGCAGCTGATCTGAGTTCAGCTTGTTTCATTATGTTGTCTTCTTCTCAAGGAAAACTGGTCCGTAATGGTGAGGACAGGAAACCAGTGatttGCATCGAGGGAAACATCGCGAGTGGAAAGACGACGTGTCTGGAGTATTTCAGCAAAACCAGCAACATCGAGGTTCTGACGGAGCCGGTTTCCAAATGGAGAAACGTTCGAGGACACAATCCCCTGGCGCTGATGTACGAAGACCCGGCGAGGTGGGGTCTCACACTGCAGACCTACGTTCAGCTCACTGTCCTCGACCATCACCTGTCCCAAATCGCAGCGCCGGTCAGGATGATGGAGAGATCGATATACAGCGCAAAGTACATATTTGTGGAAAATCTGTATAAAAGTGGGAAGATGCCCGAGGTGGATTACGCCGTCCTGAGCGAGTGGTTCGAGTGGATCATCAGTAACATCTCCATTCCTGTAGATCTGATTGTTTACCTGCAGACGTCGCCTCAGAAGTGTTTTGATCGTCTGAAGCAGAGAtgcagagaagaagaaaaagtcaTTCCACTGgagtaCCTGCAAGCTCTTCATCATCTGTATGAAGACTGGCTGATAAATCACACCTCATTTAAAGTTCCTGCTCCTGTTCTGgtgatcCCAGCTGATCATGATCTTCAGAAGATGCTCCATCAGTAcgaggagaacagagagaagatCTTCACCGTGCCTCGAGCTTCATAAAGAGAAACGTTTTGTTCCAGAGGCAGTGTTCAATCCAGCCGAGTGTGTTTCCTGCCCTGTTTTAACttcattaagtgtgtgtgtgtgtgtgtgtattggggtAAGTGTTAAACAATACTTCATAAGggttaaataataatgtaaaaaataaataaatatcagtgaTAGTAATTAGGGATAATTATGAATCTTTGAACTGACAGTGAATCAATTTGATTCATGATTCAAAATCAATTTTTGTAAGTTAAGATGATTTGATTCAGTGAGTCGATTCAGTGAGtcattttttattgatttatatttttcccAGCTGCTAGTCtgtaacacgcacacacacacacacacacacacacacacacacacacacacacacacacacagtgtaatctCAGGCTCAGGTGTGTGTAGAGGACCATTTTCTAATGAagtttatttgttatttcttatatattattattatttattttcctcatttgcatattaattggTATATCATTCATATTTATCTTGCTGTTTAAATCACATTCCACAGATCAGACCTTCATCCTGTTTCGTAAAGTTAAAACACCGAACACAAGACCagtttttgtaaagtttatttttatttgtttgaagcGTACAAAACCCTGAAATGTTCTCATTAAGGAAGTGGCACGTGTGATTGGAGGACCAACGGAGACTCTCTGTACTTTTTACTGTCGTATTGTTTACACTGTAATTTTAATAAACCAGTGAGAAACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424569 lncRNA upstream 14635 448081 ~ 452014 (+) False cmtm4
TU424570 lncRNA upstream 14635 448081 ~ 452014 (+) True cmtm4
TU424571 lncRNA upstream 14635 448081 ~ 452014 (+) False cmtm4
XR_004577246.1 lncRNA upstream 65793 399347 ~ 400856 (+) True LOC117596071
TU424568 lncRNA upstream 72028 391333 ~ 394621 (+) True G358338
TU424593 lncRNA downstream 8763 485735 ~ 487322 (+) True G358359
XR_004577209.1 lncRNA downstream 68604 545576 ~ 548885 (+) True LOC117596049
TU424735 lncRNA downstream 155516 632488 ~ 632693 (+) True G358478
TU424767 lncRNA downstream 400284 877256 ~ 914967 (+) True G358508
TU424772 lncRNA downstream 431524 908496 ~ 919746 (+) True G358513
XM_034299619.1 mRNA upstream 18060 426873 ~ 448589 (+) False cmtm4
XM_034299617.1 mRNA upstream 45781 405979 ~ 420868 (+) True dync1li2
XM_034299618.1 mRNA upstream 45913 405979 ~ 420736 (+) False dync1li2
XM_034299454.1 mRNA upstream 90403 362885 ~ 376246 (+) True nae1
XM_034299453.1 mRNA upstream 114881 344062 ~ 351768 (+) True ccne1
XM_026937569.2 mRNA downstream 476233 953205 ~ 995231 (+) True cdh11
XM_026937736.2 mRNA downstream 826909 1303881 ~ 1433318 (+) True cdh8
XM_026937737.2 mRNA downstream 826909 1303881 ~ 1433318 (+) False cdh8
XM_034299423.1 mRNA downstream 912860 1389832 ~ 1433318 (+) False cdh8
XM_034299457.1 mRNA downstream 1543748 2020720 ~ 2174969 (+) True itfg1
TU424567 other upstream 27763 426896 ~ 438886 (+) False cmtm4
TU424577 other upstream 114880 348769 ~ 351769 (+) False ccne1
TU424578 other upstream 114880 348769 ~ 351769 (+) False ccne1
TU424579 other upstream 114880 348769 ~ 351769 (+) False ccne1
TU424532 other upstream 117973 344118 ~ 348676 (+) False ccne1
XR_004577234.1 other downstream 1413602 1890574 ~ 1904591 (+) True LOC117596061
TU425115 other downstream 1844199 2321171 ~ 2338758 (+) False c25h16orf87
TU425321 other downstream 2159317 2636289 ~ 2664941 (+) False igdcc4
TU426380 other downstream 3246054 3723026 ~ 3729877 (+) False cylda
TU426382 other downstream 3264814 3741786 ~ 3745457 (+) False cylda

Expression Profile