RNA id: XM_026937737.2


Basic Information

Item Value
RNA id XM_026937737.2
length 4392
RNA type mRNA
GC content 0.49
exon number 12
gene id cdh8
representative False

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 1303881 ~ 1433318 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacactcgcGCGCTCAGCTCGCAGCAGCCTGCCGGAGCTCCTGACACGTGCACACACATCTCTAGCAGTCCGCACTCCTCCGTTATCCTGCTTCATTCTCTCttcccccaaacacacacacacacaggcacacatacacacacagtctctctccctctctctctctctcacacacacacacacacacacacaaacagaaagcgATGAGGCTTTATTTCTGAACCAGCCCTCGACAGAGGAGACGTCGCAGCCGGATCGGGAGACTGACGCTCGATGGATTACGTTTTTTTCCCCGCTCAGGAGGCAAACCTCAGCTTTTCCATGACACCATGAACCCGAGCTTCGGGATACGAGGACGGAAAGAGTAACGAGgtggaagaactggagtaaGAACAAGAAAGGAGAGAGGTAGAAAAGCCGGACTGTGAAGATGCCGAAACGGAGAGAGGAGATGCAGAGAGACGTGTGGACTCGGATCTTGCTGGCGTGGATTACCTGTGTATGCTTCGGCTCCTCAGCGCCGTTTGTTAACCAGTCGCAAAGTTTAGAAACAAGGCCGAGTTCAGAAAGTGAGACTTCCAAGCCGGAAGGACGACGCGTCCTCCATCGGGCCAAAAGAGGATGGGTTTGGAATCAAATGTTCGTGCTGGAGGAATTCTCTGGACCCGATCCGATCCTCGTTGGCAGGCTCCACACGGATCTAGACGTGGGGAATAAGAACATCAGGTACGTTCTGGCCGGAGAAGGAGCAGGAACCATCTTCGCCATCAATGAGCTGACAGGCGACATCCACGCCATGAAGAGGCTGGACCGCGAGGAGAAGGCGGAGTACACGCTCACGGCGCAGGTCATCAACCGAGACACCAACGAGCCCCTGGAGCCTCCGTCAGAGTTCATCATCAAAGTGCAGGACATCAACGACAATCCGCCGCAGTTCATCGAGGGGCCGTACCAGGGCTCGGTGCCCGAAATGTCCCCCGTCGGAACCTCGGTGACGCGGGTCACAGCCACGGACGCCGACGATCCGGTGTACGGAAACAGCGCCAAACTGGTGTACAGCATTTTGGAAGGACAGCCGTATTTCTCCATTGATCAAAACACCGCAATCATTAAAGTCGCCCTGGCCGGGATGGATCGAGAGATGAGGGAGGATTATCTGGTGGTCATTCAGGCTAAAGACATGGGAGGTCACATGGGGGGATTATCCGGGACCACCACGGTCACCGTCACGCTGACGGACATTAACGACAACCCGCCCAAATTTTCAAAAGGCTCGTACGAGTTCACCATCGCCGAAGACCTCGGCATCGGAAAACCCGGCGGACGAGTGAAAGCCAACGACCGGGACATCGGAGAAAACGCAAAATCGACGTACAGCATCATAGCAGGAGACGAGAAGGACGTGTTCGAGATCGTGACTGACTCTCAGACTCAAGAGGGAATCCTCACTCTGAAAAAGGCTCTGGACTTCGAGAGTAAATACTTTTACAACCTGACAGTGGTGGCGACCAACATTCGGCCTTCAGCAACCGGAGCCCCGTTTATGGACCAAACGACCATCAAAATCATCGTAGAGGACGCGGACGAGCCTCCCGTCTTTACAAAGTCCACTTATGTGTTTGAAGTGCATGAAAACGCCGCCATTAACACCGTCGTTGGAACCGTTACAGCCCGAGACCAGGACGCTACACGCAGCCTCATCAGGTACTCGATCGATCGGCACACAGATCTGGAGAGGCAGTTCAATATCCATGTGGACGATGGGAAGATCACGTTAGCCAAGCCGCTGGACCGAGAGACCGATACGTGGCACAACATCACCGTGACGGCTACGGAAATCCGGAACCACAGCCAGATCTCCAGAGCGATAGTGGCGATCCGAGTGCTGGATATAAACGACAACGCTCCTGAATTTCCCACCGAGTACGAAGCCTTTCTTTGTGAAAATGGCAAACCTGGTCAGgtgatcCAGACCATCAGCGCTGTGGACAGAGACAATCCAGCTCAAGGACACACGTTCCACTACAGACTGGAGATGCTGAACAACCCGAACTTCACCATTAAAAACAACTTAGACAATTCCATCAGCATCCTGGCGAAACACGACTCGTTCCGTCgtcagaaacaggaagtgtacCTGCTGCCCATCGTGGTGAGTGACGACGGAGATCCGCCGATGAGCAGCACCAACACGCTGACCATCCGAGTgtgcggctgcagtaaagacggCGTGGTTCAGTCGTGTAACGTCGAGGCCTTCGTCCTGCCCATCGGCCTCAGCATGGGGGCGCTGATCGCAATCCTCGCCTGCATCATCTTACTGCTCGTGATCGTGGTTCTGTTCGTGACTCTGCGGCGGCACAAGAGCGAGCCGCTGATCATCAAAGACGAAGAGGACGTTCGCGAGAACATCATCACGTACGACGATGAGGGCGGCGGTGAGGAGGACACGGAGGCGTTCGACATCGCCACGCTGCAGAACCCTGACGGCATCAACGGCTTCCTGCCTCGCAAAGACATCAAACCCGAGCTGAGCTACAGCGTCCGCGCCGGACTCAGACCCGCCGCCAACGGCGTCGACATCGACGAGTTCATTAACGTCCGGCTCCACGAGGCTGATAATGACCCGACGGCACCTCCATACGACTCCATCCAGATCTACGGCTATGAAGGTCGAGGATCTATGGCTGGATCTTTGAGCTCGCTGGAAACTTCTTCGTCAGATTCGGACCAGAATTTCGATTATCTCAGAGAGTGGGGTCCGCGGTTTAGAAGACTCGGAGAGCTCTACTCAGTGGGCGAGAGCGACAAAGAAACTTGAggcattacttttttttcactctcatgACGTTTGCATTATGGTGCTCGCCAGATCACGATTAAAACACATCTGTTTCAAAATGGcgggaacttttttttttttttggaaaactgtTAGAGACAAGCATACTAGGGTTAGTCATCTACATCGAAGTGCGTAACGGGGCTGAACTTCACCACCACAGTGTCTGTCGTAGGAGGTCACTGATTCTTGTGGAGTCTTTTAGATTAAGTGTTTCTGGCTTGTCGTTTGTTCACTGTGACCACCGGAAATGTAGGTTCTTGTTGGTCACgtaaagagaaagacaaaaaaaaaggattcagtGAAGTGGATGGACTTCTGAGGCCTCAAAATGGCTCCACACGTCTCCTTAACATCATCCAGCCAATCCGAGGAAGAAAGAAGAACCTTACAAAATCGACTAAAAAGCAATATATGGTCTACTATgttgaatgtatgtgtgtatgtttaaaggTGAGATAAGTGTACAATATTGGCTTTAATAGATCTTAGTTGAGATAGCATTTGATACCGAGTGGCCGGATTTCCTGAAAAGCCTCGCGGCTTGCTTTATACACCCTGTTTGTATTCGCGCTCTTAGTGTGTTTCACACTCGAACATTAGTAGCCTATAACAGACtgaagacaaaaagagaaatgtagAAACAACGAGGCCTTCTTTTTACAGAAGCAAACATTAAATACGGttgtatttaaacatttttggaaaCATCAATCGTGTTTACTTCATTAGCGTAgtatgatttataaatatatgaatattcattGTCTGTTTTGTGCTGCGGGTATAAAAAATATGGTGTCATTTCGggtttctctttttctgctttgtttCGTTTGTCACCAGAACGCTCTTTTTATAAACGCTAAAATCAGAAATACAGTACTGCAGTCCATGCAGAGGTCACCAATGATCCTGTTTACACCTGGTCATTTCATGCCTCTTGTTTTGAGGATCAGCGTTATATCTATATATCAACATATCTATATATCCAGTAAAAATGCAGGTGTAAACGTACCTGTTCAAAAGGGATTTAAACGAAATTACTCAAAATTTCAGGAGATCTGAGATACCTTTTAATCAGATATTATATAAGAGCAAACGCATCTGTGCATAAAAGACACATTGggccttgaaaaaaaaaacctcaatatAACCTGTCATGACTGACACCCTGTACaatataacataaatgaaacaCCTTCTGATGCATCAAAACAACACCTCTTTCAGTATGTTAGGTCAGAACTGTAACTGCTACCAGTGCAATACGTCATGACTGAAAGCTGTCCCAATATATTACTCATTACATCATGACTGAAACCCCACAACACATTACGCCATGACTGAAACCCCTCCTCAATCATTATGTCATGACTGAAACCCCTCCTTAAACATTACATCATGACTGAAACTCCTCCTTAAACATTACATCATGACTGAAACCCCACAACACATTACGCCATGACTGAAACTCCTCCTTAAACATTACATCATGACTGAAACTCCTCCTTAAACATTACATCATGACTGAAACCCCTCCTTAGa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424861 lncRNA upstream 63743 1239914 ~ 1240138 (+) True G358587
TU424851 lncRNA upstream 163523 1140007 ~ 1140358 (+) True G358577
TU424781 lncRNA upstream 331535 971580 ~ 972346 (+) True G358519
TU424780 lncRNA upstream 359859 939236 ~ 944022 (+) True G358518
TU424776 lncRNA upstream 375190 926763 ~ 928691 (+) True G358515
TU424994 lncRNA downstream 16837 1450155 ~ 1450465 (+) True G358713
TU425001 lncRNA downstream 174321 1607639 ~ 1607911 (+) True G358720
TU425010 lncRNA downstream 282228 1715546 ~ 1715887 (+) True G358726
TU425086 lncRNA downstream 492490 1925808 ~ 1928313 (+) True G358796
TU425132 lncRNA downstream 546902 1980220 ~ 1980594 (+) True G358828
XM_026937569.2 mRNA upstream 308650 953205 ~ 995231 (+) True cdh11
XM_026937706.2 mRNA upstream 826909 466540 ~ 476972 (+) True tk2
XM_026937707.2 mRNA upstream 826909 466649 ~ 476972 (+) False tk2
XM_034299619.1 mRNA upstream 855292 426873 ~ 448589 (+) False cmtm4
XM_034299618.1 mRNA upstream 883145 405979 ~ 420736 (+) False dync1li2
XM_034299457.1 mRNA downstream 587402 2020720 ~ 2174969 (+) True itfg1
XM_026937401.2 mRNA downstream 744660 2177978 ~ 2203598 (+) True LOC113540805
XM_026937615.2 mRNA downstream 853752 2287070 ~ 2298515 (+) True dnaja2a
XM_026937439.2 mRNA downstream 887814 2321132 ~ 2338762 (+) True c25h16orf87
XM_026937382.2 mRNA downstream 914503 2347821 ~ 2384488 (+) False mylk3
TU424567 other upstream 864995 426896 ~ 438886 (+) False cmtm4
TU424577 other upstream 952112 348769 ~ 351769 (+) False ccne1
TU424578 other upstream 952112 348769 ~ 351769 (+) False ccne1
TU424579 other upstream 952112 348769 ~ 351769 (+) False ccne1
TU424532 other upstream 955205 344118 ~ 348676 (+) False ccne1
XR_004577234.1 other downstream 457256 1890574 ~ 1904591 (+) True LOC117596061
TU425115 other downstream 887853 2321171 ~ 2338758 (+) False c25h16orf87
TU425321 other downstream 1202971 2636289 ~ 2664941 (+) False igdcc4
TU426380 other downstream 2289708 3723026 ~ 3729877 (+) False cylda
TU426382 other downstream 2308468 3741786 ~ 3745457 (+) False cylda

Expression Profile