RNA id: XM_034299454.1


Basic Information

Item Value
RNA id XM_034299454.1
length 1942
RNA type mRNA
GC content 0.50
exon number 19
gene id nae1
representative True

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 362885 ~ 376246 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGTGCAGTTAAAATGCTGCAGAGTGATTATTTTTACTAAAAGCTTTAATCGGTGACGGTGTAAAGTTTGTCATTATGCTTGTAGTCTGTAGATGTAGATGGCTGAATTTACGTCAGGGAGTAGGAAGCTGCTGTTCCTCCCCCTGTGTAGTGCAGTATGTAGGCGGCAGTGagcggtttgggacgcagccgcAGCGCTTcactgagacacagacagagagagagagagagagagagagagctgctggTGCAGGAGCTGAGCCGGCATGGCCGAACACAAACCCAATAAAGAGCAAAGATACGACCGACAGCTCAGGTTATGGGGAGATCATGGTCAGGATGCTCTTGAAAGTGCACATGTGTgtctgataacacacacacacaggcTCTGCAGCTTCTTTCTCAGCAGCGACAGTATCGGCAAGagcCGAGCTCAGGCAGCGACTGAGTTACTGCAGGAACTGAACAGTGATGTTTCAGGAAACTTTGTGGAGGAGGACGCTGATAAGCTGCTGGAAAACGATCCGGAATTTTTTAACAGATTCAGTTTGGTCATCAGTGTTCAACTTCCAGAAAGtgtgtgtttgaggttgGCGAGTGTGTTATGGAAGGCCAGCGTGCCGTTCCTGGTCTGCAGGACGTATGGACTCGTTGGGTACATGAGACTCGCCGTGAAGGAACACACAGTGGTGGAGTCTCACCCCGACAGCGCTCTGGAGGATCTCAGACTGGACGCTCCGTTCTCCGAGCTGAGAAATCACATCAAGTCCTACGACCTGGACTCCATGGACAAGAAGGATCACAGTCACACGCCGTGGATCATCATCATCGCTAAATATCTGGAGAAGTGGTACAGTGAGCATGACTTTCAGTTGCCAAAAAATTACAAGGAGAAGGAGGCGTTCAGACAGCTGATCAGAGACGGGATTCGTACGAATGAAAACAGTGCtccggaggaggaggagaactTTGATGAAGCCATTAAGAACGTCAACACGGCTTTAAATCCCactaagatctgCAGCAGTGTGGAGGAGATCTTCAGGGCTGAGCAGTGTGAGAACATCACCTCACAGACTCCGGCGTTTTGGGTGATGGCTCGAGGTGTGAGGGATTTTGTGCAGAACGAGGGGAACGGGAAACTCCCCCTGCGCGGCACCATCCCGGATATGATCTCTGACTCCGATAAATTCATCAACCTGCaaaatgtttacagGGAGAAGGCAATGCAGGACGCTGCTGTTGTGGCCAAACACATCGAGTCTCATCTTCAGGCTGTTGGgaagCCAGCAGAGAGCGTCTCCGAGCAGGACATCAAACTGTTCTGTAAGAGTGCGGCGTTCCTGCGGGTGATCCACTGCAGATCTCTCTCTGAAGAATACAGTGTGGAAACTATTAACAAGGACGAGATCactTCCTGTATGGATAATCCAGACAGTGAGATGGTTCTCTATCTCATGCTGCGTTCTGTGGATCGTTTCTACCAGCAGCACTCCAGATACCCAGgtgtgtatAATTACCAGGTGGAGGAGGACATCAGCAGgttgaaggtgtgtgtgaacagtcTGCTGCAGGAGTACTCACTCAGCGTCAACGTTAAAGACGACTACATTCACGAGTTttgcCGTTACGGAGCTGCAGAGCCACACACAGTCGCAGCATTACTGGGAGGAGCTGCAGCTCAGGAAGCCATCAAACTCATCACACACCAGTTTGTGCCATTTAACAACACGTTCATCTACAACGCCATGGCCCAGACATCAGCCACCTTCCAGCTCTGAGACTCTGCAAACCCGctcgtgtgcgtgtgtgtgcgtgtgtgtgcgcgtgtgtgtgtgtgtgtgttttactcagCTCGATTTACTCATTACTGTGTTCTTAAAGTCACTGTTCATCAATAAACACTGCATCAGTAATAAATACTGTCTCTGATAAAACACCA

Function

GO:

id name namespace
GO:0045116 protein neddylation biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K04532 NAE1, APPBP1; NEDD8-activating enzyme E1 regulatory subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424536 lncRNA upstream 76358 284243 ~ 286527 (+) True G358312
TU424539 lncRNA upstream 88262 273454 ~ 274623 (+) True LOC113525132
XR_003402628.2 lncRNA upstream 88370 273464 ~ 274515 (+) False LOC113525132
TU424527 lncRNA upstream 182735 179938 ~ 180150 (+) True G358305
TU424526 lncRNA upstream 183571 179026 ~ 179314 (+) True G358304
TU424576 lncRNA downstream 2984 379230 ~ 424643 (+) True G358344
TU424568 lncRNA downstream 15087 391333 ~ 394621 (+) True G358338
XR_004577246.1 lncRNA downstream 23101 399347 ~ 400856 (+) True LOC117596071
TU424569 lncRNA downstream 71835 448081 ~ 452014 (+) False cmtm4
TU424570 lncRNA downstream 71835 448081 ~ 452014 (+) True cmtm4
XM_034299453.1 mRNA upstream 11117 344062 ~ 351768 (+) True ccne1
XM_026911576.2 mRNA upstream 24244 330987 ~ 338641 (+) True si:ch211-260e23.9
XM_026911574.2 mRNA upstream 39555 320536 ~ 323330 (+) True plekhf1
XM_026911593.2 mRNA upstream 56122 299673 ~ 306763 (+) True LOC113525130
XM_034299617.1 mRNA downstream 29733 405979 ~ 420868 (+) True dync1li2
XM_034299618.1 mRNA downstream 29733 405979 ~ 420736 (+) False dync1li2
XM_034299619.1 mRNA downstream 50627 426873 ~ 448589 (+) False cmtm4
XM_026937706.2 mRNA downstream 90294 466540 ~ 476972 (+) True tk2
XM_026937707.2 mRNA downstream 90403 466649 ~ 476972 (+) False tk2
TU424577 other upstream 11116 348769 ~ 351769 (+) False ccne1
TU424578 other upstream 11116 348769 ~ 351769 (+) False ccne1
TU424579 other upstream 11116 348769 ~ 351769 (+) False ccne1
TU424532 other upstream 14209 344118 ~ 348676 (+) False ccne1
TU424567 other downstream 50650 426896 ~ 438886 (+) False cmtm4
XR_004577234.1 other downstream 1514328 1890574 ~ 1904591 (+) True LOC117596061
TU425115 other downstream 1944925 2321171 ~ 2338758 (+) False c25h16orf87
TU425321 other downstream 2260043 2636289 ~ 2664941 (+) False igdcc4
TU426380 other downstream 3346780 3723026 ~ 3729877 (+) False cylda

Expression Profile