RNA id: XM_034299618.1


Basic Information

Item Value
RNA id XM_034299618.1
length 1462
RNA type mRNA
GC content 0.55
exon number 13
gene id dync1li2
representative False

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 405979 ~ 420868 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAATGCCGCCTCCCTTTGTGGTTTGGTTTGAGATACAAGATGGCTCCGGTGTTGGAGAAGAAGCTGCTGGGTGCAGCCGGGACAGAAGGCCACAACATGGACAACAGCGCCGAGGAGGATGAGGGACAAAACCTGTGGTCCTCGATCCTCAGCGAGGTGTCGACGCGATCCAGTACCAAACTGCCGTCTGGGAGGAACATCCTGCTCTTCGGTGACGATGGATCGGGGAAAACGACGCTGATGACCAAACTGCAGGGAGCGGAGCACAATAAGAAGGGCAGAGGACTGGAGTACCTGTACCTGAACGTGCACGATGAAGACAGAGACGACGTGACGCGCTGTAACGTGTGGATTCTGGACGGAGACGTTTATCACAAAGGCCTGCTGAAGTTTGCCGTGTGCTCCGAGTCTCTGAAGGACAGCGTGGCCGTGTTCGTGGTGGACATGTCCAGACCCTGGTCCATCATGGAGTCTCTGCAGAAGTGGACGAGTGTCCTGAGAGAACACGTGGACAAGCTGAAGATTCCTCCCGAGGACATGAGGGACATGGAGCAGAGGATGGTGAGGGCGTTTCAGGAGTATGCGGAGCCTGAGGAGGCGACTCCGTCCTCCCCTCAGAGACGAAGCGCTCCTGCAGGAGGAGATGACGAGTCAGTGGTGCTGCCGCTGGGAGAAAACGTCCTCACGCACAACCTGGGAATCCCCGTGCTGGTCGTCTGCACTAAGtgtgatGCTGTCACTGTGTTGGAGAAAGATCATGACTACAAAGAGGAGCATTTTGACTTCATTCAGTCGCACCTCAGGAGATTCTGCCTGCAGTATGGAGCTGCTCTGATCTACACGTCTGTAAAAGAGGAGAAGAACCTGGACCTTCTGTACAAGTACATGGTGCACAAACTGTACGACTTCCACTTCACCACACCGGCCTTAGTGGTGGAGAAAGACGCCGTGTTCATTCCGTCCGGGTGGGACAACGAGAAAAAAATCTCCATCTTACACGAAAACTTCACGACCGTCCGGCCGGAAGATCCGTTTGAGGATTTCATCATCAAGCCTCCAGTGCGCAAGttaGTGCACGATAAAGAGATAAACGCTGAAGATGAGCAGGTCTTCCTCATGAAGCAGCAGTCTTTGTTAGCCAAGCAGCCGGCCACTCCATCACGAGCAGCAgaatcTCCCGCGCGGACGGCGTCTGGTTCTCCTCGGCCCACTGTACGCACCGGACCCACCAACGTGGCGAGTGTGTCTCCCATGACGACCGTAAAGAAACCCGACCCCAACATGAAAGgagctGCTGCAAACGAGGGTGTTTTGGCGAACTTCTTTAACAGTCTGTTGAGTAAAAAGACCGGAGCGCCTGGAAGTCCGGGaacagcaggaacagcagtGCAGGGATCAGCCAAGaaaacagAAGCCGGCTCTGAGTGACGTGCAGGCTGAACTGGACCGCATGACGCACAAA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0007018 microtubule-based movement biological_process
GO:0005868 cytoplasmic dynein complex cellular_component
GO:0005525 GTP binding molecular_function
GO:0003777 microtubule motor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577246.1 lncRNA upstream 5123 399347 ~ 400856 (+) True LOC117596071
TU424568 lncRNA upstream 11358 391333 ~ 394621 (+) True G358338
TU424536 lncRNA upstream 119452 284243 ~ 286527 (+) True G358312
TU424539 lncRNA upstream 131356 273454 ~ 274623 (+) True LOC113525132
XR_003402628.2 lncRNA upstream 131464 273464 ~ 274515 (+) False LOC113525132
TU424569 lncRNA downstream 27345 448081 ~ 452014 (+) False cmtm4
TU424570 lncRNA downstream 27345 448081 ~ 452014 (+) True cmtm4
TU424571 lncRNA downstream 27345 448081 ~ 452014 (+) False cmtm4
TU424593 lncRNA downstream 64999 485735 ~ 487322 (+) True G358359
XR_004577209.1 lncRNA downstream 124840 545576 ~ 548885 (+) True LOC117596049
XM_034299454.1 mRNA upstream 29733 362885 ~ 376246 (+) True nae1
XM_034299453.1 mRNA upstream 54211 344062 ~ 351768 (+) True ccne1
XM_026911576.2 mRNA upstream 67338 330987 ~ 338641 (+) True si:ch211-260e23.9
XM_026911574.2 mRNA upstream 82649 320536 ~ 323330 (+) True plekhf1
XM_026911594.2 mRNA upstream 99216 300109 ~ 306763 (+) False LOC113525130
XM_034299619.1 mRNA downstream 6137 426873 ~ 448589 (+) False cmtm4
XM_026937706.2 mRNA downstream 45804 466540 ~ 476972 (+) True tk2
XM_026937707.2 mRNA downstream 45913 466649 ~ 476972 (+) False tk2
XM_026937569.2 mRNA downstream 532469 953205 ~ 995231 (+) True cdh11
XM_026937736.2 mRNA downstream 883145 1303881 ~ 1433318 (+) True cdh8
TU424577 other upstream 54210 348769 ~ 351769 (+) False ccne1
TU424578 other upstream 54210 348769 ~ 351769 (+) False ccne1
TU424579 other upstream 54210 348769 ~ 351769 (+) False ccne1
TU424532 other upstream 57303 344118 ~ 348676 (+) False ccne1
TU424567 other downstream 6160 426896 ~ 438886 (+) False cmtm4
XR_004577234.1 other downstream 1469838 1890574 ~ 1904591 (+) True LOC117596061
TU425115 other downstream 1900435 2321171 ~ 2338758 (+) False c25h16orf87
TU425321 other downstream 2215553 2636289 ~ 2664941 (+) False igdcc4
TU426380 other downstream 3302290 3723026 ~ 3729877 (+) False cylda

Expression Profile