RNA id: AMCG00000449


Basic Information

Item Value
RNA id AMCG00000449
length 8190
RNA type mRNA
GC content 0.51
exon number 20
gene id AMCG00000449
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14757134 ~ 14779964 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTACCCCTCTTGGGGGAAGTATGGCGGTGGTCATCAACATCCGCCGCCTCCTCCACAGCACTACGGAGTGAAACCGCCGCCTGTGAGGGGTCCCCCACCGCCGGGACCAGGGTATGGGGGATATGCGCCACCTGCGAGCTATCCTGCGGCCCCTGCACCCGGTCCGGCCTCGTCCAACTTCTCGAGTCTGCGGGAGCAACATCTGCAGCAAATGCAGCAATTGCAGCAACTCCATCAAAAGCAGCTCCAGTCTGTCCTGCATCACAACAATAGTCCTTACAGCGGTGGCTCTGCCCCGGGAGCCTGGCAAAGTGGTGGCACCGGGTTTCCCGCCCCGGCTCCGGGACCGGGACCTTCCGCTCCAGCCCCTTACCAACAGCCGCAGCACCAGAGGGTTCCGCCGATTGCACCGCCTGAGCAGCCTCACCACACGCCGCCGCTGCCAGTGCCAGCTCCGCAGCACCCGACCACTGAACCCAGTCCTCCGGCGCCGGGTCCCAACGGCGCTTCCCAGCAGGCCAACACACGGGAAAACTCATCGGAAAATCCGGACAGCGGTGCTGCCAAACCTGCGGAGGAGAAAACAGATGTGTCTTCCATGACATTGCAGgaGCAACAGCAGTATTGGTACAAGCAGCACCTCCAGAGCctacaaaaattgaaaaatgataAGGCTaaagaaaagcttcagaaagAAGCTCGCCCACCTGTCAACAATCAGACCACAAGTGCCCCCCCTCCACCAGTAGAGCCCCCCAAGAATGAacccccacctccaccacccAAAGAAGagccccctcctccacccccacccgACGACTCTAAGTCGGCACTGATTGCTTCCGTGAAACTGAATGTCAAGAACTACCATGACTCTTGTATTTTCCTTCCACCCCAGACGATGCCGGTGGACATGCAGCTCAGACACTACGAGATGCAGCAACAGCAGTTTGCTCCTCTGTACCAGGAGTGGGATCGGCAGTTTAAACTGTGGCAGGAGCAGTTCCAGGGTTACCCCCATAAGGATCAGCTACAGGATTATGAATGTCAGTGGAAGCAGTGGCAGGAACAGATGAAATCTACTTCGGCACACCTGCAGGAAAGGGTCACGACCCTTCGCACCATGCAGCACCAGTATGCCGCCACATCTTACGTAGGTGGCATGATGGGGATGCCACCGTATGGGCAGTACCACCATCCCGTGTCGGACGCACAGATGCCACCACCTACATCAGTAGCCTCTGCTACACTACTCTCTTCAGACAAGGAATCCCCATCTGCCTCAGCTCCACTGCCACAGGGCCCCCCTCCGCAGGGCCCCCCTCCGCAGGGCCCCCCTCCGCAGGGTCCTCCGCCACTGGGTCCCCCGCCCCAGGGCCCCCCTCCGAAGGGTCCCCCGCCGCATGGCCCCGTGGCACATGGTCCCCCACCGCATGGCCCCCCACCGCATGGCCCCCCGCTGCATGGCCCCCCGCCACAGGGCCACCCACTGCGGGGCCCCCCACCACAAGGCCACCCACCGCGGGGCCCCCCGCCACAGAGCCACCCACCGCATGGCCCTCCGCCACAGAGCCACCCACCGCAGGGCCACCCACCGCGTGGCCCCCCACCACAGAGCCACCCACCAAAGGGTCCCCTCCCGCAGGGCCCTCCACCACCGGGCCCCCAGCCACAGAGCCACCGACCGCAGGGCCCCCCGCCACAGGGTACCCCACCTCAGGGTCCCCCACCCACAGGGCCTCTTTTATCAGGGCAGCAGGGTGCACAGGGCCATTCAGCCCCACACTATGTACCTCCCTCAACAACGTCAACTGCAGAAGCCCCACCTCCCTCTGCCTCAGCCTCAGGGAAATCGATGCCTCCTGCTGCAGGTGCTTCATCAGCGGTTTACACCTCCAGTGGTCCAGCTGTTTCAGGAGGGAGGCCGTCTGCACTGTTGCCAACTCCCAGCCCAGCACCCAGTTTTGAAGGCCCAAGAGGGCCAAGGTTTGATGGTCCCAGGGGGCGTGGTGCTCCTAGGTTTGAGCATCATCATCAGCAGAGGTTTAATGCACCACCCCGATTCGAACCTCCTCCCAGAGCTGAACAACCAATGAGATTTGATCAACCACCTAGAGCCAACCAAACATCGCGTTTTGGAGCACCATCAAGATTTGAGCCACCTCCTAGGCCAAACCCCCCATCTCGTTTTGAACGCCCCCCTGCGCCTCAACAGCCACCTGGGTTTGCTCCACCATCCAAACCTGAGCCTTCTAAAGCCCAAGAAGATAAATCACTGGAGAGTCAAAGTGGGACCTCGTCTAACAACAAGGGCTCCAAACCTGAAGACCCACATGAACTACCTAAACCTGCAACTCAAAATCAAGCTCCTGCTCAAGACTCCTCTCTTAAGGAAACTGTAACGGATGATTTCTTGGAATCAGAGTGTGGATTCTTTGTCCCAAGTGATCCCATACCTCAGACTACTTTGAATAGGCCAGGGCCAGTAAATAAACCTAGTAAACCTAGCGGAGAGGTTGCTAACAAACCACAGCCTTCAGAAACATCCAAGGTACCTATGTTAGAGACTTCTGCTGAGCCACAGAAACAATCTGCCACCCATAAAAACTCCTTTAATCAGGGTGAAGAAAAACTCAAGAATGATATAAACACTGGTCCTCAAACACAAGAGAAACTTCCTGAACAGATTCCCCCCAAAACTGAACCCTCTAACCCAACTCATGGTTTCTCTCCCAGGGACAACCAGAAAGTACATGCTCCTATGGGGCGAGGAAGGGGACAGGAGAGAGGCCGGGGACGTGGGCGAGGTCATCCTGGAGCACCTGGTGGACCAAAAGCTTTTGGTCCCAATTCCAGTGTTGCATCCAATCTACGCACAGAGAGTATTGAGCCCAAGCCATATGATTATAGGCCGCCTTTCCAGGAGGGCAGCATAGAAATGAACCAAGAGGAGGAGGGCTATGATTGGCAGGATCCATCTATAGATAGGCGGGCGGGGCTTGATGGCAGACTGCCACCTCCCCAAGGTGAGCGGTggggcagagaggaggaggagcattACCAAAAAGATTATTATGAAGATTGTGGAAGACCAGACCATCCTTTAGACAGAGACACCCTGGAGGGTCCTGGTAGAGAGAGACACTGGGAGGAGCCAGGACCTGACTACTGGGAAGAGGGTGATCCCTACTGGAGGGAAGAGAGGCCACCATTCCGACACACACCCCCATTTCCCCATGATGCAATGGATAGGCCACCCAGGCGCCTCCCTCCTCCTCATGAGTACATGCACCGTGGTCCGAGGCGCCCCCCTCTACCTCACGAGATCATAGAACGGGATCTTAGGGGACCCCCTCTGCATCATGATGTCATGGAACGGGATCCCAGGGGGCCTCCTGTGTACCCTGATGTCATAGAAAGGGAACCCAGACGCCCTCCTCCGCCTCGTGAAGTCATAGACAGGGATCCCAGGGGACCTCCTTTCCATCATGAGGTCATGGATCGAGACCCCAGATGGCCTCCAGTGCCACATGATGTTTTAGACCGGGAACCGAGGCGTGCTCCTGTGCCTCGTGAGATAATGGACAGAGACTCCAGACGACCTCCTTTGCCTCATGAAATGATGGAAAGGGATTCTCGTCGCCCGCCCCCACCTCCTCACGAGCCCATGGAGAGAGACATTGCACGTGGGCCATATTTCAGGGAGTATGACCAAGAGTTTGTCCCAGACGTGGAAAAATATGGAAGACCTCACCCAGATTACCACAGCCGGGATTATGAACGAGAACCGGATTATCATCGCCCAAGGAATGAGTGGGGAGCAGGGGATCATGGCTGGGAGCCTCCATACCCTCCCCGAGCACCACCTGATCGCTTCAGGGACGACCGATGGCCTGAGGAAAGAGATCAGGACTATTTGTACGAGCGGGGTGTACAGGAAAGGGGGGAGCTGCGTGTCCGTGAGTACCCAGAGGAGCCCCCTTACAGGAGGGAAGAGCAGGAATACCCACCAGAGTGGGAAAGGGAGCCTCTATCTGAGAGAACATTCGTGCCAGAGATCGATGACCGGAGACCTCCGTTTGAAGCTCCTGTGGAGCTACAACCTCCTGCTTCGCATGGTAATCCCCCAGAAACTCAGATGGATGAtggaactggaactggaaaGGGCATTCTGGCTCTTTCTCAAAGACAACATGAAATTATTCTTAAAGCTGCTCAGGAACTCAAGATGATAAGGGAACTCCAGGAAAAGAAACATGCTCTGAATGAGCTTTTCAAACCAGAAAATGAGCCAGTGGTGCAGTCAGAGGTAATGGCAACAGGGATACTTGGATTGGAGATCCCCCCTGCAGTGGCTGATGCCTTACAGgCGACTAACCTGCTGCCCGATGCTGGCCTGACGTCTGCAGGTACAGtggcaggtgcagggcatgcttggGGTAATGAGAATCTACACCGTGTTTGGGACACTGGAAGTACCACACAAGGCATGGAGCCAAACTTTAGGATGTCACAGGCTGCTATTCCAGAGGTCACACCACTGGCGACTCCTACACTCGTCAAACCTACTCTCATTCCCAAAACTGTGGATTATGGGCATGGGCATGATGCTGGATCTAAGGTTGAGCAGATCTCTTATGGTGAAAGGATCATCCTAAGACCAGATCCGGTGCCCACAGAGAGGGCTTATGAGAAAGAACCAATTCCCAGGGATCACTATGAGAGAGACCTGTATTATGAGAGACGCGGTGACCCGTATTTGGAGCGGCGGGAGTACggcagagagcgagagagggaccGCGAGAGAGAGCTGTACCGTGAAAAGCCTCCTCTGGATTACGAGAGGGAACGGTATGAGAGGGAGCGCTATCCCAGGGATGAAAGGCTCCCCCCAGGCCCACCTCCTCGTTCAAGCAGCTACAGAGACCGGGACAGAGAGGGAAGGgacagcagagacagagagcgcGAGGGCCGAGGCAGCAGAGACAAGGACATGAAAGAGCACTTCAGCAGGCCCGGGTACGAGAGGCCACCGTACGAGCGCGGGTCTGATCGCCCACCTTACGATCACCCCTCTCCCGCTTATGGAAaTGACAGGAGGAATTATCCTGAAGAGAGGCTCCCTGTTCCAGCCCAGCCtttacccccccaccctccgGCCCAACCACGAGTTGAAAAGAAACCCGACACGAAAAACGTGGACGACATCCTTAAACCCCCAGGCAGAGAGAGCCGCCCCGAGAGGatcGTCATCATTATGAGAGGACTGCCAGGGAGTGGGAAAACCCACGTAGCAAAACTCATTCGGgacAAGGAGGTTGAATTTGGAGGAGCACCCCCCAGAGTTCTTGGGCTGGATGATTATTTTATGACTGAGGTAGAAAAGGTTGAGAAGGATCCAGACACAGGAAAACGCGTTAAAAGAAAGGTTTTGGAGTACGAATACGAGCCCGAGATGGAAGACACGTATCGCAACAGCATGCTTAAAACCTTTCGCAAGACCCTGGACGACGGCTTCTTCCCCTTCATTATCATCGATGCCATTAACGATCGGGTCAAATACTTTGATCAGTTCTGGAGTGCAGCCAAGACTAAAGGTTTTGAGGTCTACTTAGCTGAAATCTCTGCAGATAACCAGATATGTGCAAAACGGAACATCCACGGCCGAAAAGTGAAGGACATTTCAAAGATAGCCTGTAACTGGGAGTCCGCCCCTCGCCACATGGTGCGACTGGATATCCGGTCCTTACTGCAGGATGCTGCCATTGAAGAGGTTGAGATGGAGGATTTTGACCCAACAGCAGAAGAGCCAAAAGTAGAACCGAAGAGAGAGACCgtggaggaggaagaaggagaTCTGGGTTACATTCCAAAAAGCAAATGGGAGATGGACACCTCTGAGGCAAAGCTTGACAAGCTGGATGGGCTGAGGAGCAGTTCGAAGAGGAAGCGGGACTGGGAGAGCGCGGCAGGCATGGAAGACTACCTACAGCTTCCAGACGACTACGCCACCCGCATGTCGGAGCCAGGGAAGAAAAGGGTGAGGTGGGCGGATCTTGAAGAGAAAAAAGATGCAGACAGGAAGCGAGCTATTGGGTTTGTCGTCGGACAGACAGATTGGGAGAAAATCACGGATGAAAGCGGACAACTTGCTCAGAGAGCACTCAATCgTTGGCTGGCTGTGAAGAACAGACCCAAAATCTTGAATGTGAAGTGGTCCTGAAATCTGTATCTGTACACTTTGAGTCCCTGGATACTCCTACAGCGATTCTTCACttgaaacacaaaattaagACAATAGTGGATCGTTTTGTTAGGCTCAAGGTAGAATCACGGTCCATTGCAGAACTCCTTTCGGTACCATGAAATTGTTAGTGTTTCCGTTTTTTTatactttgtatgtattttatgtaacctgtgagcactgttgcttattttaccatttaaaaaagaaaaaaacaataaaaaaatacacaaaaaaatagaattcTCATGTGGCTCATGTGAATAATCATATGAGCCTCAAAATTATgtatggtcttttttttttctgctacgTAACATCTTCCAGTACAAAATACAGCTTTTCATGACCAATGAGCACATGGGAAGCACATGTGTGTAATATCCTTCTTTTCAGTGTGCCGCTCATGTATGTTTCTCATCTGTGCTGTAAgaattcttttttaaatttgctttcAGTAAACAGTTGCAATTGGAAGGTGCTGTTTAAGATGGTAGTCTGCATCAGACACTGACAATAGAGACTGAATACAATGCTTCTACATCAGGGAATGGagcattattaaattacatgcGCCCCAAATTACTGCTGTAAATCAAGagctttattttataatctaTATTGTCCTGTttcagtaaatacaaaaatcattgACATGTCAAAgctaaaatgaaatgaattcaTGTTCTTCAACCTTAATCCCATTCATCGAATAAACAACAGCAAGTCATGCTCCTGAGGAATGTTTTCAGACTTGAAATGGGAGTGCTTGATTTACTTAAATTCTTTGTTTTACggatattcaaaataaattattgaaagaTTAAAATTTGAAACCATGCAATTTTAGCATTTCCTGTATCCGATTTATGGCGTAGtaaaaatgcactgatttgcaCTCTGCCGTCTGCCATATTGTACTGGACTGAAAACCAGCAATAGCGTTCAATGCCACGAACCACAAAAAAGCATCAACTCCCTAACGTCTCCTTATTAcgattttctgttacaaaatcAATACGTGAGGATTTTATGAGGATCTtggatttaaaatatcaatttgcTGTCTGCTACTTGTATTAAccttctttcttccttttcccTTTATCCAGCATGGTTAACTTGTTTTTCGACTGCAGTTGTACTTGTGGTTTTGTGTAAACTCAGTATTGAATACGCTTTGAGCTGAtgggagggggtggaggggtgaAAGGAAGAGATTTGTGGAATTTTGCATTGGAAGCATAATTCTGTAATGAGATCATACGGTTACTCATTTGGTTAGAGTGcattgtttctcttttaagaaattgcttttgtatttgGTAACTGTTTCTTCCACTGTCTAGAAATGGGCTTAAAACCGTTACTTTCAAGTAGATTAGTGTTGCTAGAATGAAATATGTTAAGTCTGAGagacttcattattttatttttatttattttttattagtggCAGCTTTCAGTCTTAAAGTGGTAAGTTACAGGAATAGGTCCACATGGCTTATCATGTGGCTTGTACTGTAGGGCTCGAGCCACGggattttattgaaatatcaCTAGAGCAGGTCGCGTGGATCAAgtactggggtggggggtgccaGCAAAAACGCCAGCACACCTGGGACTGTGACCAGCATTTGCATTGTATACAGTAGCGTGCGTTGATTTATGTACGATAATTATCTTTGTCTGTACATacattaaacagtttttttctcaATCTTAATTTCACTaatctttttaattgaaaagagTTCATGATGTGCATGATGTCAAGGATTGTGGAGTTGGATGGTTTGCATTTATAACATTTGCACATTACCAAAGGAATTGCCATCAtagctttatatttattatcgATGGTGAGAAAATGACTGTCTTCTACGTATGTCTAACTGTGAATTGTGTTAAATGCTATAAAAGAACAAgtacatctatttt

Function

GO: NA

KEGG:

id description
K17602 YLPM1; YLP motif-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189234 lncRNA upstream 23694 14733232 ~ 14733440 (+) True G150364
TU189157 lncRNA upstream 291832 14464892 ~ 14465302 (+) True G150303
TU188905 lncRNA upstream 1011018 13739776 ~ 13746116 (+) True G150106
TU188855 lncRNA upstream 1107083 13649403 ~ 13650051 (+) True G150066
TU188827 lncRNA upstream 1344070 13412865 ~ 13413064 (+) True G150042
TU189295 lncRNA downstream 151814 14931778 ~ 14939473 (+) True AMCG00000443
TU189297 lncRNA downstream 151814 14931778 ~ 14944400 (+) False AMCG00000443
TU189346 lncRNA downstream 344746 15124710 ~ 15125951 (+) True G150455
TU189348 lncRNA downstream 357742 15137706 ~ 15137923 (+) True G150457
TU189349 lncRNA downstream 374671 15154635 ~ 15155084 (+) True G150458
AMCG00000437 mRNA upstream 1209 14752253 ~ 14755925 (+) True AMCG00000437
AMCG00000439 mRNA upstream 159520 14590800 ~ 14597614 (+) True AMCG00000439
AMCG00000430 mRNA upstream 171177 14580186 ~ 14585957 (+) True AMCG00000430
AMCG00000429 mRNA upstream 179105 14572724 ~ 14578029 (+) True AMCG00000429
AMCG00000432 mRNA upstream 184888 14567331 ~ 14572246 (+) True AMCG00000432
AMCG00000447 mRNA downstream 19761 14799725 ~ 14809276 (+) True AMCG00000447
AMCG00000448 mRNA downstream 92468 14872432 ~ 14879117 (+) True AMCG00000448
AMCG00000443 mRNA downstream 152821 14932785 ~ 14943990 (+) False AMCG00000443
AMCG00000456 mRNA downstream 330881 15110845 ~ 15123601 (+) True AMCG00000456
AMCG00000461 mRNA downstream 405483 15185447 ~ 15187339 (+) True AMCG00000461
TU189044 other upstream 603294 14133138 ~ 14153840 (+) True AMCG00000412
TU188861 other upstream 1064545 13690839 ~ 13692589 (+) True G150069
TU188603 other upstream 2029231 12679670 ~ 12727903 (+) True G149859
TU188404 other upstream 2771419 11982460 ~ 11985715 (+) False AMCG00000352
TU188165 other upstream 4221997 10534590 ~ 10535137 (+) True G149525
TU189714 other downstream 2156029 16935993 ~ 16938282 (+) True G150750
TU189794 other downstream 2765490 17545454 ~ 17548508 (+) True G150811
TU190029 other downstream 3373900 18153864 ~ 18159321 (+) True G150976
TU190161 other downstream 3637216 18417180 ~ 18419471 (+) False AMCG00000550
TU190212 other downstream 3762413 18542377 ~ 18565627 (+) True AMCG00000572

Expression Profile