RNA id: AMCG00000525


Basic Information

Item Value
RNA id AMCG00000525
length 3927
RNA type mRNA
GC content 0.47
exon number 3
gene id AMCG00000525
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 17748510 ~ 17759582 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctcatttttaatttacGTGTGAGATAAGTCTTTCAATTtatgcagatttattttgtgatttcaaaatgaattaagtgcaagtaaaatattttatggGCAAGTACTATTCATGCAGCACTTAATCccattttgaatttcatttgtttgttttactcaatTGAAACAGAATATGTGGCAGAATAAATCAATACTTTGCCCTACCCATCAATTGCAAATTAGCATGGCTTAATGATGCAGGGAACATTAAACAgccaatgataataataataaaaaaagaaagagatgaTTAATCGTTCCCTATGGAGATGGAAGAATTTGTATATTGTAGTGGTATTTCAAGAGTATTGTTCTGAAAAATAAGGCCATAAAACATGCCGGGTCACTTTGAACCTGGTCTGGAAAAGACACCAGtctattttatgtttatgtgtaaaatggccattaaaggTAAAGTTTTCcacatgtgatttattttattttattgcagacCCCAAGCTAATATTGAAATTTTACATGTCCATCTGATTGAAAATTATATGTAGCACTTAGTGGAAATTAATCTTAAACGGACTATccataaaacatgtttcattaCATATCCGATTACTTATTCAGATTGAGGACCCTGCCTTTCAAATGGAGTGAATAACCATTTTCTGTTGAAATTGCATACACCATACCAATATCTATACTACTGTCTTTTAATAAACCATGCTGCAGTTTAGGGTTATACCCAATACGTGTTCttataaacattaaacaaaccattttattgcaaaatgcatttgaaagaataTCAAGTTAAGTAAGATCAACACAAACAACTCAATTGTTGCCTGGTGTGTGTATTGATGTAAAGGTGTGTTGGGAAAAGCGAAGACTGAACTATACTGCGCACTTTGCTCGCGTTCTAGTGGCGCAGCtctccgcagttctgcgcagatctgcccCTTTCTCGCCACGCCATTGGTGCAAATGTGCAGATCTGCCCACACGGAGGCGCCCGGTCCTGCCTCTTCCCCGCCGCTGCGCCGCCGGTCTCGGCAGCCTGTTTAGCGCCTCTCCGCGTCCGGCTCGGCGCAGCGCTACAGCGGATCAAATCACAAGCGCTTCTCCGGGGGGAACCAGACGGGTCtccctcctcgtcctcctcagAAAGCCCAGGCCGGCACAGATGCGCAGACGGCTGCTTCCCCAGCGGCGCATCCCACTGCACATCACTGGGGAACTGGGAGGAGGCGAACTTGGAAACTGAACTTGCTGTACAAACCCGAGCAGACGCAGGGAAGCGATGAGGATGTGATCTGCAAGCCACAGTGAGAAGACCACTGCTGGGTCCGGCCGCTGGGATCCCATGACAAGCAAGGATGGAGAAAGTCTTCATCAACGCCTTCAAGGATGACACCTGACCCGACGCGCTTGTTTTGAGGGTGTTATTATTTACCACTACCATTGAGAGGCAAAGACAGACGGATCATGGATATTTGAGGAGAATATAGTTTTGCACCAGAAACGCCACCCTCCGCCCGAGCTCAGTATTTGAGGGTGAAAAAGACGGGAGATCTTAACTGGACTACTCCCCGTGGCAGACCATGCGGAGGGCCCCCAGCGAGGCTGCGTGATGGCCGGCCGCGGGGGCTGCTGCTGCGGGCCGGGGCCCCTCAACGAGGACAACGCGCGGTTCCTCCTGCTGGCGCTGCTCATCGTGCTGTACCTGCTGTGCGGGGCCGCGGTCTTCTCGGCGCTGGAGCACCCCAAGGAGAAGCAGGCCAAGGAGAGGTGGGTGCAGAGGTTTGACAATTTCACCCAGAGGTACAACCTGAGCCGAGGGGAGCTGGAGAATTTCCTGCGCTTTTATGAGGAGGCCAATGTGGCCGGGATCCGGGTGGACAGCATCCGACCCCGCTGGGACTTCACCGGCGCCTTCTACTTCGTTGGGACGGTGGTTTCCACCATAGGGTTTGGAATGACCACTCCAGCCACCATCGGAGGCAAGATCTTCCTCATATTCTATGGTCTCCTCGGCTGCGCTGCTACCATCCTGTTCTTCAACCTGTTCCTGGAGCGCCTCATCACGGTGCTGGCGTTCATCCTGAAGTCCTGCTATGAGAAGCAGCGGCGCAGGAAGGGCGTGCTGCCCCACGACAACAGGAGAGACTCCACCCACTCGGAGGGGCCAGACAGCCTCAGCGGCTGGAAGCCCTCAGTGTACTATGTCATGTTCATCCTGTGCATGGCGGCCATCATTGTCTCCTGCAGCGCCTCAGCCATGTACTCGGCCATCGAGGGCTGGAGCTTCTTCGACTCCCTCTACTTCTGCTTCGTGGCCTTCAGCACTATAGGGTTTGGGGACTTGGTCAGCAGCCAGAAGCAGGAGTACGAGAACCAGAGTCTCTACAGGCTGGGCAACTTCTTCTTCATCCTCATGGGGGTGTGCTGCATCTACTCCCTGTTCAACGTCATCTCCATCGTGATCAAGCAGACCCTCAACTGGATCTTGAAGAAGCTGGAGTGCCGCTGCTGCCTGCGCTGGCAGAGGAAGGGCTTCCGGGCCCGGAGGAACGTGGTGATGCCCGGCAACTTCCGCACGCGGCGGAACATCTCCATCGAGACGGACGTGATCAACGAGAGCGACATGGATGGCCGCCGCATGTCGGGGGAGATGATCTCCATGAAGGACTTCCTGGCTGCAAACAAGGTATCCCTGGCCATCATGCAGAAGCAGCTGTCGGAGACGGCCAATGGACACCCGCGACAGTCAGGTTCCAGCTCTCGACACAATGGCTTCTCTGGGGGGGTCGGGGCCCTCGCCATCATGAACAATAGACTGGCAGAGACCAGTGTGGACAGGTGAACCTCGGGGGAGTAAgacttgtcttgtcttgtcttgtctggACAGCTACTTCAGGGGGAATATTTATATCCCGAACCACCAAAGTTCAGCCGGTAGATGCATCTACGTCTCCTTTTTACAGTACAATATTTAACGCTGCAAGTTAGATTTATAGTTTTATACAGAACAGGCGGCAAGTCAATCTAAAGATAGTTGGACAGAGAGGACAGTTATATTCCTGGTGTCACAAGTCTCATTTACTACCATCTTCTCATCGAATGATCTTGATATGCATGGGATTTAAATCAAGCCTTTAATATAAACTAagctttggttttgtttttctccgtGAGACTTCTCTGTTAGACAGCACTGACCCAGGCATGAAATGACCACAGAATGCATTTCTCATTGTAAACACATTGACAATATAGAATGCCTGAACAgcataaataacagaaaataacatgCAGGGTAGACAAGGGGATTCAGAAGCAAAATGCTTAAGCTACAGCTGAAACCAGTCCCTGAATGTTATATCATCCTGGACTCTTGAAACACAAATCCCACAAATATCCCAAAATATTGAGCcgatttgaaaatgaattgcacTGCTGAGAACATTATGAGAGACGGCTACAGGAAGCCCCTGTAAACCGTATTGTTAATTGTTCCCCGTTTTATGCAGGGTAAGTTCAGAAGCATTCCTGCATGTCTTCCCTGTTTTCTCAGTCAAATTCAATGATATCTGACTTGGAAAGACGTAAGATAACATTATCTGTTTAATTGTAGATAGAGGGAAAGGAGATCagtgataaaatatttttgtataatacaCCATAATACACCATATGGAGAGGAACTCGAACGGTATCACGATATCGGATCCAATTGGATCCTTTGACTGCATCGTTTGATCACTGCATATATTTCCCCTGATATTTCATCTGTTGAGAGTATTTAATTAGCTAAGCTGATTGTACTGTTTACAAAACAACtgctgctgtactgtacatttagaTTGTTtatcattaattcattataaaGAATATTTCAGTTGCATTCCTCTGGGGAAATGGCGGTGGATTTTTTTT

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005267 potassium channel activity molecular_function

KEGG:

id description
K04922 KCNK13, K2P13.1; potassium channel subfamily K member 13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189824 lncRNA upstream 46169 17655576 ~ 17702341 (+) True G150831
TU189793 lncRNA upstream 200002 17548210 ~ 17548508 (+) False G150811
TU189742 lncRNA upstream 246657 17196477 ~ 17501853 (+) True G150767
TU189674 lncRNA upstream 936527 16811453 ~ 16811983 (+) False AMCG00000514
TU189639 lncRNA upstream 1025883 16681915 ~ 16722627 (+) True G150689
TU189893 lncRNA downstream 109716 17869298 ~ 17870290 (+) True G150877
TU189913 lncRNA downstream 190352 17949934 ~ 17968712 (+) False G150886
TU189912 lncRNA downstream 208170 17967752 ~ 17971252 (+) True G150886
TU189938 lncRNA downstream 214743 17974325 ~ 17974800 (+) True G150909
TU189942 lncRNA downstream 234977 17994559 ~ 18063346 (+) True G150913
AMCG00000526 mRNA upstream 488 17719649 ~ 17748022 (+) True AMCG00000526
AMCG00000530 mRNA upstream 209101 17529717 ~ 17539409 (+) True AMCG00000530
AMCG00000506 mRNA upstream 318013 17427522 ~ 17430497 (+) True AMCG00000506
AMCG00000507 mRNA upstream 348163 17377382 ~ 17400347 (+) True AMCG00000507
AMCG00000505 mRNA upstream 392687 17340772 ~ 17355823 (+) True AMCG00000505
AMCG00000527 mRNA downstream 1121 17760703 ~ 17768088 (+) True AMCG00000527
AMCG00000520 mRNA downstream 35766 17795348 ~ 17800754 (+) True AMCG00000520
AMCG00000542 mRNA downstream 124247 17883829 ~ 17938428 (+) True AMCG00000542
AMCG00000543 mRNA downstream 199222 17958804 ~ 17962974 (+) True AMCG00000543
AMCG00000537 mRNA downstream 239225 17998807 ~ 18004848 (+) True AMCG00000537
TU189794 other upstream 200002 17545454 ~ 17548508 (+) True G150811
TU189714 other upstream 810228 16935993 ~ 16938282 (+) True G150750
TU189044 other upstream 3594670 14133138 ~ 14153840 (+) True AMCG00000412
TU188861 other upstream 4055921 13690839 ~ 13692589 (+) True G150069
TU188603 other upstream 5020607 12679670 ~ 12727903 (+) True G149859
TU190029 other downstream 394282 18153864 ~ 18159321 (+) True G150976
TU190161 other downstream 657598 18417180 ~ 18419471 (+) False AMCG00000550
TU190212 other downstream 782795 18542377 ~ 18565627 (+) True AMCG00000572
TU190785 other downstream 2209757 19969339 ~ 19972015 (+) True G151522
TU190974 other downstream 3082356 20841938 ~ 20843463 (+) True G151676

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00023712 True 1989 mRNA 0.45 2 NC_007128.7 16336278 ~ 16342388 (-)